Click here to switch to the map view.

The map label for this gene is yfgC [H]

Identifier: 84621663

GI number: 84621663

Start: 8754

End: 9560

Strand: Direct

Name: yfgC [H]

Synonym: XOO_0006

Alternate gene names: 84621663

Gene position: 8754-9560 (Clockwise)

Preceding gene: 84621662

Following gene: 84621664

Centisome position: 0.18

GC content: 64.06

Gene sequence:

>807_bases
ATGAAAGCCAAGCTGTTGACTGTTTTTGCCGTGCTTGCACTCACGGCATGTGCCACCACAACGTCGCCAACCGGCCGCCG
ACAGGTGGTGGGTGGCGTGTCGCAACAGCAACTGGACCAGTTGGGCGCGCAATCTTTCGCGCAGACCAAGGCCAAGGAAA
AAGTCAGTACCGACGTCAGGCAGAACGCCTACGTGCAGTGCGTCGTCAATTCGCTGGTGGCGCAACTGCCGCCACAATGG
CGCGAAACCAAGTGGGAAACCGCGCTGTTCGTCGATGACGAAGCCAATGCCTTCGCCTTGCCCGGCGGCAAAGTCGGTGT
GAATACCGGCATCTTTACGGTCGCCAAGACCCAGGATCAGCTCGCCGCCGTGCTCGGGCACGAGATCGGGCACGTGATCT
CGCGTCACCACGAAGAACGCATTACTCGCCACCTCGGCGCGCAGACCGGCCTGGGCATCATCGGCGCGCTTGCCGGTGCC
GCCTATGGCGACGGGGTGGCCAGTGCGGTCAATCAGGTTGGCGGTATGACCGCCCAGACAGTGTTCCTGCTGCCCGGCTC
GCGGGCCCAGGAAAGCGAAGCCGATGTGGTCGGCCAACGTCTGATGGCCCAGGCCGGGTTCGATCCGGCGCAGGCGGTCA
CGCTGTGGCAAAACATGATGGCCGTCAGCGGCAATCGCCAACCCCAGTGGTTGTCGACCCACCCCGATCCTGCCAACCGC
ATCCGCGAGCTGCAGACCGACGTTGGCCAGCTCGAACCTGTCTACCAGCAAGCCAAGCAGGCCGGGCGCGTGCCGCGTTG
CGGCTAG

Upstream 100 bases:

>100_bases
ATCCCTACCGAGCGCATGCGCCTCGGCGGCGCATGGGGCCGTTTGACGAAATGTTCAGACGAGCCTGCCAAAATGGCCCA
AGGGTTCTAGGGGCGATCGC

Downstream 100 bases:

>100_bases
AGCCGCTAACGGCACCTGCGCGGCCTTTGTCGATCAGTGCGCTTGCTGACCGGGATTCAACGCCTGCCTCATTACATTGC
TGGCGCAGGCGCTGCGACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKAKLLTVFAVLALTACATTTSPTGRRQVVGGVSQQQLDQLGAQSFAQTKAKEKVSTDVRQNAYVQCVVNSLVAQLPPQW
RETKWETALFVDDEANAFALPGGKVGVNTGIFTVAKTQDQLAAVLGHEIGHVISRHHEERITRHLGAQTGLGIIGALAGA
AYGDGVASAVNQVGGMTAQTVFLLPGSRAQESEADVVGQRLMAQAGFDPAQAVTLWQNMMAVSGNRQPQWLSTHPDPANR
IRELQTDVGQLEPVYQQAKQAGRVPRCG

Sequences:

>Translated_268_residues
MKAKLLTVFAVLALTACATTTSPTGRRQVVGGVSQQQLDQLGAQSFAQTKAKEKVSTDVRQNAYVQCVVNSLVAQLPPQW
RETKWETALFVDDEANAFALPGGKVGVNTGIFTVAKTQDQLAAVLGHEIGHVISRHHEERITRHLGAQTGLGIIGALAGA
AYGDGVASAVNQVGGMTAQTVFLLPGSRAQESEADVVGQRLMAQAGFDPAQAVTLWQNMMAVSGNRQPQWLSTHPDPANR
IRELQTDVGQLEPVYQQAKQAGRVPRCG
>Mature_268_residues
MKAKLLTVFAVLALTACATTTSPTGRRQVVGGVSQQQLDQLGAQSFAQTKAKEKVSTDVRQNAYVQCVVNSLVAQLPPQW
RETKWETALFVDDEANAFALPGGKVGVNTGIFTVAKTQDQLAAVLGHEIGHVISRHHEERITRHLGAQTGLGIIGALAGA
AYGDGVASAVNQVGGMTAQTVFLLPGSRAQESEADVVGQRLMAQAGFDPAQAVTLWQNMMAVSGNRQPQWLSTHPDPANR
IRELQTDVGQLEPVYQQAKQAGRVPRCG

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI21686999, Length=160, Percent_Identity=32.5, Blast_Score=85, Evalue=6e-17,
Organism=Escherichia coli, GI1788840, Length=204, Percent_Identity=30.3921568627451, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082185, Length=162, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322940, Length=183, Percent_Identity=30.6010928961749, Blast_Score=93, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 28560; Mature: 28560

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKLLTVFAVLALTACATTTSPTGRRQVVGGVSQQQLDQLGAQSFAQTKAKEKVSTDVR
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QNAYVQCVVNSLVAQLPPQWRETKWETALFVDDEANAFALPGGKVGVNTGIFTVAKTQDQ
HHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCEEECCCCCEECCCCEEEEECCHHH
LAAVLGHEIGHVISRHHEERITRHLGAQTGLGIIGALAGAAYGDGVASAVNQVGGMTAQT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
VFLLPGSRAQESEADVVGQRLMAQAGFDPAQAVTLWQNMMAVSGNRQPQWLSTHPDPANR
EEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
IRELQTDVGQLEPVYQQAKQAGRVPRCG
HHHHHHHHHHCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKAKLLTVFAVLALTACATTTSPTGRRQVVGGVSQQQLDQLGAQSFAQTKAKEKVSTDVR
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QNAYVQCVVNSLVAQLPPQWRETKWETALFVDDEANAFALPGGKVGVNTGIFTVAKTQDQ
HHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCEEECCCCCEECCCCEEEEECCHHH
LAAVLGHEIGHVISRHHEERITRHLGAQTGLGIIGALAGAAYGDGVASAVNQVGGMTAQT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
VFLLPGSRAQESEADVVGQRLMAQAGFDPAQAVTLWQNMMAVSGNRQPQWLSTHPDPANR
EEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
IRELQTDVGQLEPVYQQAKQAGRVPRCG
HHHHHHHHHHCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]