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The map label for this gene is 84490187

Identifier: 84490187

GI number: 84490187

Start: 1580165

End: 1580893

Strand: Direct

Name: 84490187

Synonym: Msp_1405

Alternate gene names: NA

Gene position: 1580165-1580893 (Clockwise)

Preceding gene: 84490186

Following gene: 84490188

Centisome position: 89.41

GC content: 29.36

Gene sequence:

>729_bases
ATGAATGTATTATCTGCTATGGCTGGAATCTGTGATGGTGAGTTTTGTAAGAAATTTACTAAAGAAAATATTGATATTAT
AACTTTAGGTGGATATAATTCAGATTTAGAAACAGATACTGCAGGTATTGAAAACACAAAAAATAATAGGCAAGAATTTA
TAATTAAACCCACTGAATTATCTTCCCACATATCAAAACAAGTAGAAATAATCAGAAACTACAATCCATCATGGCAAGGT
TTAATTAGTGTTAATTTAAGAGGTATAAAACCAGAATCATTTAGAGTAGTTAAGAACAACAAAAATATTGATATTTTAGA
AATAAATGCTCATTGTAGACAAGAGGCTGTTGTAAAAGCAGGTGCTGGAGAAGGTCTTCTTAAGGATAAGAAGAGACTAA
GTCAAGTATTAGATGAGGTTTCATCGTATGATATGGATGTTAGTGTGAAGATACGTGCAAATGTATGTGGTGTTGATACT
TTAGAAATCACTAAATTAATAGAATCATATAATATAGACTATATTCACTTAGATGCTACAAATCCTGGAATTATGGAAGC
TGATTATGAAATTATAGAAGAAGTTAGTAACAACACAGAGATACATTTAATTGGAAATAATAGTGTTACAACACATGATG
ATTATATGAAAATGATAAATAGTGGAGCTGATAGTGTTTCTGTTGCAAGAGCTGCACTTAATGGAAATATCCAAGATATT
TTTTATTAA

Upstream 100 bases:

>100_bases
TTTAGATGAATATTAATAACCATCCTTTTTTTTATTTTTATGAAAACTATTTTTTATTAAAATTATACTAAAATAAATGT
TTATGTGAGAGGTTATTATT

Downstream 100 bases:

>100_bases
ATATGAAAAATTAATTATTTATGAAAACCATAAGTATTATTAATATAAAATAATTATACTAAGAAAATATCTTTTTAAAT
AATAATTAAATGTAATAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNVLSAMAGICDGEFCKKFTKENIDIITLGGYNSDLETDTAGIENTKNNRQEFIIKPTELSSHISKQVEIIRNYNPSWQG
LISVNLRGIKPESFRVVKNNKNIDILEINAHCRQEAVVKAGAGEGLLKDKKRLSQVLDEVSSYDMDVSVKIRANVCGVDT
LEITKLIESYNIDYIHLDATNPGIMEADYEIIEEVSNNTEIHLIGNNSVTTHDDYMKMINSGADSVSVARAALNGNIQDI
FY

Sequences:

>Translated_242_residues
MNVLSAMAGICDGEFCKKFTKENIDIITLGGYNSDLETDTAGIENTKNNRQEFIIKPTELSSHISKQVEIIRNYNPSWQG
LISVNLRGIKPESFRVVKNNKNIDILEINAHCRQEAVVKAGAGEGLLKDKKRLSQVLDEVSSYDMDVSVKIRANVCGVDT
LEITKLIESYNIDYIHLDATNPGIMEADYEIIEEVSNNTEIHLIGNNSVTTHDDYMKMINSGADSVSVARAALNGNIQDI
FY
>Mature_242_residues
MNVLSAMAGICDGEFCKKFTKENIDIITLGGYNSDLETDTAGIENTKNNRQEFIIKPTELSSHISKQVEIIRNYNPSWQG
LISVNLRGIKPESFRVVKNNKNIDILEINAHCRQEAVVKAGAGEGLLKDKKRLSQVLDEVSSYDMDVSVKIRANVCGVDT
LEITKLIESYNIDYIHLDATNPGIMEADYEIIEEVSNNTEIHLIGNNSVTTHDDYMKMINSGADSVSVARAALNGNIQDI
FY

Specific function: Unknown

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005270
- InterPro:   IPR001269 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 26919; Mature: 26919

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLSAMAGICDGEFCKKFTKENIDIITLGGYNSDLETDTAGIENTKNNRQEFIIKPTEL
CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
SSHISKQVEIIRNYNPSWQGLISVNLRGIKPESFRVVKNNKNIDILEINAHCRQEAVVKA
HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEEEECCHHCHHHHHCC
GAGEGLLKDKKRLSQVLDEVSSYDMDVSVKIRANVCGVDTLEITKLIESYNIDYIHLDAT
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECC
NPGIMEADYEIIEEVSNNTEIHLIGNNSVTTHDDYMKMINSGADSVSVARAALNGNIQDI
CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
FY
CC
>Mature Secondary Structure
MNVLSAMAGICDGEFCKKFTKENIDIITLGGYNSDLETDTAGIENTKNNRQEFIIKPTEL
CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
SSHISKQVEIIRNYNPSWQGLISVNLRGIKPESFRVVKNNKNIDILEINAHCRQEAVVKA
HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEEEECCHHCHHHHHCC
GAGEGLLKDKKRLSQVLDEVSSYDMDVSVKIRANVCGVDTLEITKLIESYNIDYIHLDAT
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECC
NPGIMEADYEIIEEVSNNTEIHLIGNNSVTTHDDYMKMINSGADSVSVARAALNGNIQDI
CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
FY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]