| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
Click here to switch to the map view.
The map label for this gene is uvrD [H]
Identifier: 84488957
GI number: 84488957
Start: 143874
End: 146069
Strand: Direct
Name: uvrD [H]
Synonym: Msp_0128
Alternate gene names: 84488957
Gene position: 143874-146069 (Clockwise)
Preceding gene: 84488956
Following gene: 84488958
Centisome position: 8.14
GC content: 28.37
Gene sequence:
>2196_bases ATGATATCACAAGAAAAATACATTGAATTGGTTGAAACAATACTAAATAGAAGTATGGCTAATAGTAGTCAAAAAGAAGC AATTATGGCACCAGTTGATGAGAGTCAGTACATTGTTGCAGGACCAGGTAGTGGAAAAACAACAGTACTTGTTTTAAAGA TATTAAAATACTACTTTGTTGATGATATTAGCTTTGATGATGTTATAGTAACTACCTTTACAAAGAAGGCTGCAAGAGAA TTAAAAAATAGAACTATTCTTTGGGCTAAAATGATTTCTGAAGCATTGGATTATGATCTTAATTATGATTTTAATAGAAT GGTTATTGGTACCTTGGATAGTATTGCTGAGGATATTGTCTGTGATGGTGAATCTATTGAAGTTATAGATAATTTCACAT CATCAGCTCTTATGATGCAAACATTACTTTTAGATAATAAGAATTCTAATAAGAAATTAAAACAATTTCTTAAAAAACTT AAAAACAGTGTCGGTGGTGTAAATACTACTGAGATGAACAATCAAATAAGATCTATTAGAGAACGTATTTATTATGATAT TGTTGATTATGATAAATTAAAAGAAAATTCTAATAATGAATACATATTATTTGATATTATTGATGCATATAACATGACTC TTAAAGAAAGGGGAATACTTGATTATCCTATGCTTGAAACTAGGTTGTATGATATGTTATGTGATTGTAAAGTTTCTAGA TTGAATCATTTTAAAGTACTTCTAATTGATGAGTACCAGGATACTAATTATCTACAAGAACAAATCTACTTTAAAATGGC AGGATATGTCTTGGAAAATAATGGTAACATCACTGTAGTAGGTGATGATGATCAGTCATTGTATCGTTTTAGAGGAGCAA CAATTGATCTTTTTACAGAGTATTTAAAAAGAATAAATGATTATATGGGTATTACACCTAAGAGCATTTTTTTAAAGAAA AATTACAGGTCAACTGTTAATATCATTAACTTTGTTAATGAATTCATACATTTAGATAAGAAGTATGAATCATCTCGTAG TATAAATAAGCCATTAATAGAACCAGATTCTAATTCACCTAATGGTTTACCTGTAATGGGCATGTTTAGAAACAACATTG AAGAATTAACAACTGATCTGTCCAATCTTATCTATGATTTAAAAATTGGAAAAGATACTTCCCGAAGAGTTGGTAGTAAA ATATATGATTTAAAACAAAAAGATAATCCTTCAATAGCAATTCTTACAAATTCTCCAAAGGAAATAAGTGCATATAATAG ACATAGGTTACCATTCTATGTAAGAGAATCTATAACTGGAAGAAGTGAGGATATTGCAGTATTTAATCCTAGGGGTCAAA ATATAGAGGCCACAGATATTGTTTCATTAATTTGTGGTTTAATACTTGTTTCTATTGATTCTGATGCTACTATTGAAAAT AATTTAGATAACATACCACCTCATACAAAGAAAATACTAAAAGATTGGAGAAAAAAGGTGGAAAATTATTTATCTTGTAA AGAAAAAGAAGTACCATTATATGAGGATGATATAGTCTTATCTGATTTATTAGATGATATAGAAGTAGAATGTAGTGATT TAATTAAGGAATCTAGTGAAAATAGTATTTATCATGATATAATTATGGAAACTATAAATCAGACTAACAATGCAATAAGT GATGAAGGTAGACTCTCTGCTAATCAAATATTCTGGCACATACTTGTACCTATTGCATCAGGTGCTGTTAATGTGGATGA TGACATGTTTGATGTTAGTATTGATGAAAATATAAATATCATGTCTATTCATCAGGCAAAGGGTTTGGAATTTGATATTG TTATTGTTGATGTTGGATGTGATATTTATAAAAATGATGCATCATCTGCCTTTAAAAGATTTCCAAGAAATGGTGGTAAA ACACATAGTATTGAGAAATATCTTGGTGATTATTCTAAGTTATCACTTTCTAATGAAAATAAGGGTTTGGACAATGCTTT TAATGATCTTATTAGACGATACTTTGTTGCATATACTCGTGCTAAGTCATTGTTAATTCTTGTTGGATTAAATAGTATGC GTTATGGTTATAAGGGTGATTTTCAGGATAATATTAAAATACCTAATGTTGCAACAGGATGGTCTCGAGATAAAATATGT CATTGGGTAAATTTAGATAATTTAATTCATATATAA
Upstream 100 bases:
>100_bases TACCTTACTTTAGAGGTTTAGCAAATCAATTTAAGGAATTTGATGAAGAATTAAGATTAAATTCCTATTAATTCTTCAGA TATTCTTTAGGAGTTATATT
Downstream 100 bases:
>100_bases AAAAATAGTATTTGTATTTAAAAAGAAATAAAGAGTAAAGATTTCACTCTATCCGTGGTATCTTTTTTCTCTAACTCCTC TTCCTTTTTTATTTCCTTGT
Product: helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFVDDISFDDVIVTTFTKKAARE LKNRTILWAKMISEALDYDLNYDFNRMVIGTLDSIAEDIVCDGESIEVIDNFTSSALMMQTLLLDNKNSNKKLKQFLKKL KNSVGGVNTTEMNNQIRSIRERIYYDIVDYDKLKENSNNEYILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSR LNHFKVLLIDEYQDTNYLQEQIYFKMAGYVLENNGNITVVGDDDQSLYRFRGATIDLFTEYLKRINDYMGITPKSIFLKK NYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSPNGLPVMGMFRNNIEELTTDLSNLIYDLKIGKDTSRRVGSK IYDLKQKDNPSIAILTNSPKEISAYNRHRLPFYVRESITGRSEDIAVFNPRGQNIEATDIVSLICGLILVSIDSDATIEN NLDNIPPHTKKILKDWRKKVENYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSENSIYHDIIMETINQTNNAIS DEGRLSANQIFWHILVPIASGAVNVDDDMFDVSIDENINIMSIHQAKGLEFDIVIVDVGCDIYKNDASSAFKRFPRNGGK THSIEKYLGDYSKLSLSNENKGLDNAFNDLIRRYFVAYTRAKSLLILVGLNSMRYGYKGDFQDNIKIPNVATGWSRDKIC HWVNLDNLIHI
Sequences:
>Translated_731_residues MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFVDDISFDDVIVTTFTKKAARE LKNRTILWAKMISEALDYDLNYDFNRMVIGTLDSIAEDIVCDGESIEVIDNFTSSALMMQTLLLDNKNSNKKLKQFLKKL KNSVGGVNTTEMNNQIRSIRERIYYDIVDYDKLKENSNNEYILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSR LNHFKVLLIDEYQDTNYLQEQIYFKMAGYVLENNGNITVVGDDDQSLYRFRGATIDLFTEYLKRINDYMGITPKSIFLKK NYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSPNGLPVMGMFRNNIEELTTDLSNLIYDLKIGKDTSRRVGSK IYDLKQKDNPSIAILTNSPKEISAYNRHRLPFYVRESITGRSEDIAVFNPRGQNIEATDIVSLICGLILVSIDSDATIEN NLDNIPPHTKKILKDWRKKVENYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSENSIYHDIIMETINQTNNAIS DEGRLSANQIFWHILVPIASGAVNVDDDMFDVSIDENINIMSIHQAKGLEFDIVIVDVGCDIYKNDASSAFKRFPRNGGK THSIEKYLGDYSKLSLSNENKGLDNAFNDLIRRYFVAYTRAKSLLILVGLNSMRYGYKGDFQDNIKIPNVATGWSRDKIC HWVNLDNLIHI >Mature_731_residues MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFVDDISFDDVIVTTFTKKAARE LKNRTILWAKMISEALDYDLNYDFNRMVIGTLDSIAEDIVCDGESIEVIDNFTSSALMMQTLLLDNKNSNKKLKQFLKKL KNSVGGVNTTEMNNQIRSIRERIYYDIVDYDKLKENSNNEYILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSR LNHFKVLLIDEYQDTNYLQEQIYFKMAGYVLENNGNITVVGDDDQSLYRFRGATIDLFTEYLKRINDYMGITPKSIFLKK NYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSPNGLPVMGMFRNNIEELTTDLSNLIYDLKIGKDTSRRVGSK IYDLKQKDNPSIAILTNSPKEISAYNRHRLPFYVRESITGRSEDIAVFNPRGQNIEATDIVSLICGLILVSIDSDATIEN NLDNIPPHTKKILKDWRKKVENYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSENSIYHDIIMETINQTNNAIS DEGRLSANQIFWHILVPIASGAVNVDDDMFDVSIDENINIMSIHQAKGLEFDIVIVDVGCDIYKNDASSAFKRFPRNGGK THSIEKYLGDYSKLSLSNENKGLDNAFNDLIRRYFVAYTRAKSLLILVGLNSMRYGYKGDFQDNIKIPNVATGWSRDKIC HWVNLDNLIHI
Specific function: May process damage occurring in non-replicating regions of DNA to produce recombinational intermediates for sister strand recombinational exchange [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=327, Percent_Identity=26.9113149847095, Blast_Score=103, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6322369, Length=339, Percent_Identity=28.023598820059, Blast_Score=92, Evalue=4e-19,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005753 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 83817; Mature: 83817
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFV CCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHH DDISFDDVIVTTFTKKAARELKNRTILWAKMISEALDYDLNYDFNRMVIGTLDSIAEDIV CCCCCCCEEEEHHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHC CDGESIEVIDNFTSSALMMQTLLLDNKNSNKKLKQFLKKLKNSVGGVNTTEMNNQIRSIR CCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ERIYYDIVDYDKLKENSNNEYILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSR HHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC LNHFKVLLIDEYQDTNYLQEQIYFKMAGYVLENNGNITVVGDDDQSLYRFRGATIDLFTE CCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHCCCHHHHHHH YLKRINDYMGITPKSIFLKKNYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSP HHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC NGLPVMGMFRNNIEELTTDLSNLIYDLKIGKDTSRRVGSKIYDLKQKDNPSIAILTNSPK CCCEEHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCH EISAYNRHRLPFYVRESITGRSEDIAVFNPRGQNIEATDIVSLICGLILVSIDSDATIEN HHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHEEECCCCCCCCC NLDNIPPHTKKILKDWRKKVENYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSE CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC NSIYHDIIMETINQTNNAISDEGRLSANQIFWHILVPIASGAVNVDDDMFDVSIDENINI CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEHHCCCEECCCCEEEEEECCCCCE MSIHQAKGLEFDIVIVDVGCDIYKNDASSAFKRFPRNGGKTHSIEKYLGDYSKLSLSNEN EEEECCCCCEEEEEEEEECCCEECCCHHHHHHHCCCCCCCCCHHHHHHCCHHEEEECCCC KGLDNAFNDLIRRYFVAYTRAKSLLILVGLNSMRYGYKGDFQDNIKIPNVATGWSRDKIC CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE HWVNLDNLIHI EEECCCCEECC >Mature Secondary Structure MISQEKYIELVETILNRSMANSSQKEAIMAPVDESQYIVAGPGSGKTTVLVLKILKYYFV CCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHH DDISFDDVIVTTFTKKAARELKNRTILWAKMISEALDYDLNYDFNRMVIGTLDSIAEDIV CCCCCCCEEEEHHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHC CDGESIEVIDNFTSSALMMQTLLLDNKNSNKKLKQFLKKLKNSVGGVNTTEMNNQIRSIR CCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ERIYYDIVDYDKLKENSNNEYILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSR HHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC LNHFKVLLIDEYQDTNYLQEQIYFKMAGYVLENNGNITVVGDDDQSLYRFRGATIDLFTE CCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHCCCHHHHHHH YLKRINDYMGITPKSIFLKKNYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSP HHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC NGLPVMGMFRNNIEELTTDLSNLIYDLKIGKDTSRRVGSKIYDLKQKDNPSIAILTNSPK CCCEEHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCH EISAYNRHRLPFYVRESITGRSEDIAVFNPRGQNIEATDIVSLICGLILVSIDSDATIEN HHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHEEECCCCCCCCC NLDNIPPHTKKILKDWRKKVENYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSE CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC NSIYHDIIMETINQTNNAISDEGRLSANQIFWHILVPIASGAVNVDDDMFDVSIDENINI CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEHHCCCEECCCCEEEEEECCCCCE MSIHQAKGLEFDIVIVDVGCDIYKNDASSAFKRFPRNGGKTHSIEKYLGDYSKLSLSNEN EEEECCCCCEEEEEEEEECCCEECCCHHHHHHHCCCCCCCCCHHHHHHCCHHEEEECCCC KGLDNAFNDLIRRYFVAYTRAKSLLILVGLNSMRYGYKGDFQDNIKIPNVATGWSRDKIC CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE HWVNLDNLIHI EEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8294031; 7542800; 3259573 [H]