Definition Methanosphaera stadtmanae DSM 3091 chromosome, complete genome.
Accession NC_007681
Length 1,767,403

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The map label for this gene is cpgS

Identifier: 84488958

GI number: 84488958

Start: 146702

End: 148087

Strand: Direct

Name: cpgS

Synonym: Msp_0129

Alternate gene names: 84488958

Gene position: 146702-148087 (Clockwise)

Preceding gene: 84488957

Following gene: 84488959

Centisome position: 8.3

GC content: 31.53

Gene sequence:

>1386_bases
TTGAAATCAAAAAATTCTATGAGTGTATTGTGTTTAGTTGATGGAGAACATTATTTTCCAGTAACAAAATCGGCTGTTGA
TAAAATAGAAAGTAAGGGTTATGACGTTAAATTACTCTTATTTATAGGTGGAACTGAAAAACTAAGGGATACAAATGTGG
ATATAATTTCAGAAATGTTTAATAAACCTGTATTATTTGGTCAAGATCATAGTAAAGTTCCATATGACTTAATAGAAGAA
TCTATAAAAGAATATGATGTGGGAATGGTTGTTGATTTATCTGATGAACCTGTTGTAAACTATTCAATAAGATTTAATAT
AGCAACAATTGCACTACTTAATGGTTGTATGTATAAGGGATCTGATTTTGAATTTAAAGCATTAGAAGAGGAAGATGTAC
TTAATAATCCATCATATAAAATTATAGGTACAGGTAAAAGAATTGGAAAAACTGCAGTTTCTGCATATACTGCTCGTCTT
ATTAACAAGGATAGTGATTTTGTTCCATGTGTTGTTGCAATGGGAAGAGGTGGACCTCAAATACCTGAAATAGTACGTGG
TGATAAAATACATTTAACTCCCAAATATCTTATGGAAAAATCTGATAAGGGCTTTCATGCAGCATCAGATCACTGGGAGG
ATGCTTTAATGAGTAGAGTTTTAACAGTAGGTTGTAGAAGATGTGCTGGTGGAATGGCAGGTATGGTATATGAGACAAAC
ATGGTTGAAGGAGCAATGATGACCAATGATTTGGATGTGAATCTTGTAGCACTAGAGGGTAGTGGTTCTGCAATACCTCC
AGTAAAGGCTGATAAACAAATAGTTCTTGTTGGTGGCCATCAGCCAATGGAAACATTAACAGAATATTTTGGTCCATATA
GAATTAAATTAGCAGATCTTATTATAATAACAATGTGTGATGAACAAATCTGTTCTAGGGAAAAATTAGATGATTTATTA
ATTAAGATACATGAAATTAATCCAAATGCAGATATTGTTCCAACAATATTTAGGCCACATCCTGTAGATGATATATCTAA
TAAAAATATTTTATTTGCAACAACTGCACCAGAATCAGTACAACATCTATTAAAGGACTATTTGGAAGAAAACTTTAATT
GTAATGTAGTGGCTATTTCATCTCACTTGTCCAACAGACCTCTTCTTCAAAGGGATATTGAAGAAAATATTGATAACATT
GACTGTATGCTTACAGAACTAAAGGCAGCAGCAGTAGATGTGGCAACTAAAGATGCATTAAATAAAGGTTTAGAAGTAGT
TTATTGTGATAACATTCCAATAGCAATAAACGATGAGTATGATTTAGATAAATCAATAATGAATATTGTATATGAAGCAA
AAGAAAGCTTTAATAAAAAAGATTAG

Upstream 100 bases:

>100_bases
CTTTTAAATAATAATGTAAATAAAAATTATTATATACTTTATAAAAAAAGATTTTTTCATATTATGAATATTCAAAAGAA
TTCATGTGGAGGGTATTTTA

Downstream 100 bases:

>100_bases
TTTGAATGAATTAAGAAAGATACAAGTAGCTATAGTATTAATTTTTATAGAACTTCTAATAATTTAAAAAGTAATTGCTT
AGATATAAATGAGTATACAG

Product: putative 2,3-diphosphoglycerate synthase

Products: NA

Alternate protein names: cDPGS

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKSKNSMSVLCLVDGEHYFPVTKSAVDKIESKGYDVKLLLFIGGTEKLRDTNVDIISEMFNKPVLFGQDHSKVPYDLIEE
SIKEYDVGMVVDLSDEPVVNYSIRFNIATIALLNGCMYKGSDFEFKALEEEDVLNNPSYKIIGTGKRIGKTAVSAYTARL
INKDSDFVPCVVAMGRGGPQIPEIVRGDKIHLTPKYLMEKSDKGFHAASDHWEDALMSRVLTVGCRRCAGGMAGMVYETN
MVEGAMMTNDLDVNLVALEGSGSAIPPVKADKQIVLVGGHQPMETLTEYFGPYRIKLADLIIITMCDEQICSREKLDDLL
IKIHEINPNADIVPTIFRPHPVDDISNKNILFATTAPESVQHLLKDYLEENFNCNVVAISSHLSNRPLLQRDIEENIDNI
DCMLTELKAAAVDVATKDALNKGLEVVYCDNIPIAINDEYDLDKSIMNIVYEAKESFNKKD

Sequences:

>Translated_461_residues
MKSKNSMSVLCLVDGEHYFPVTKSAVDKIESKGYDVKLLLFIGGTEKLRDTNVDIISEMFNKPVLFGQDHSKVPYDLIEE
SIKEYDVGMVVDLSDEPVVNYSIRFNIATIALLNGCMYKGSDFEFKALEEEDVLNNPSYKIIGTGKRIGKTAVSAYTARL
INKDSDFVPCVVAMGRGGPQIPEIVRGDKIHLTPKYLMEKSDKGFHAASDHWEDALMSRVLTVGCRRCAGGMAGMVYETN
MVEGAMMTNDLDVNLVALEGSGSAIPPVKADKQIVLVGGHQPMETLTEYFGPYRIKLADLIIITMCDEQICSREKLDDLL
IKIHEINPNADIVPTIFRPHPVDDISNKNILFATTAPESVQHLLKDYLEENFNCNVVAISSHLSNRPLLQRDIEENIDNI
DCMLTELKAAAVDVATKDALNKGLEVVYCDNIPIAINDEYDLDKSIMNIVYEAKESFNKKD
>Mature_461_residues
MKSKNSMSVLCLVDGEHYFPVTKSAVDKIESKGYDVKLLLFIGGTEKLRDTNVDIISEMFNKPVLFGQDHSKVPYDLIEE
SIKEYDVGMVVDLSDEPVVNYSIRFNIATIALLNGCMYKGSDFEFKALEEEDVLNNPSYKIIGTGKRIGKTAVSAYTARL
INKDSDFVPCVVAMGRGGPQIPEIVRGDKIHLTPKYLMEKSDKGFHAASDHWEDALMSRVLTVGCRRCAGGMAGMVYETN
MVEGAMMTNDLDVNLVALEGSGSAIPPVKADKQIVLVGGHQPMETLTEYFGPYRIKLADLIIITMCDEQICSREKLDDLL
IKIHEINPNADIVPTIFRPHPVDDISNKNILFATTAPESVQHLLKDYLEENFNCNVVAISSHLSNRPLLQRDIEENIDNI
DCMLTELKAAAVDVATKDALNKGLEVVYCDNIPIAINDEYDLDKSIMNIVYEAKESFNKKD

Specific function: Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP

COG id: COG2403

COG function: function code R; Predicted GTPase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cyclic 2,3-diphosphoglycerate synthetase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPGS_METST (Q2NHT6)

Other databases:

- EMBL:   CP000102
- RefSeq:   YP_447190.1
- STRING:   Q2NHT6
- GeneID:   3855021
- GenomeReviews:   CP000102_GR
- KEGG:   mst:Msp_0129
- NMPDR:   fig|339860.6.peg.127
- eggNOG:   arNOG04028
- HOGENOM:   HBG539597
- OMA:   LIDGEHY
- ProtClustDB:   CLSK785466
- BioCyc:   MSTA339860:MSP_0129-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01908
- InterPro:   IPR016557
- PIRSF:   PIRSF009445

Pfam domain/function: NA

EC number: 4.6.1.-

Molecular weight: Translated: 51303; Mature: 51303

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKNSMSVLCLVDGEHYFPVTKSAVDKIESKGYDVKLLLFIGGTEKLRDTNVDIISEMF
CCCCCCEEEEEEECCCEECCCCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCHHHHHHHH
NKPVLFGQDHSKVPYDLIEESIKEYDVGMVVDLSDEPVVNYSIRFNIATIALLNGCMYKG
CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEHHHEEHHHHHEECC
SDFEFKALEEEDVLNNPSYKIIGTGKRIGKTAVSAYTARLINKDSDFVPCVVAMGRGGPQ
CCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
IPEIVRGDKIHLTPKYLMEKSDKGFHAASDHWEDALMSRVLTVGCRRCAGGMAGMVYETN
CHHHHCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
MVEGAMMTNDLDVNLVALEGSGSAIPPVKADKQIVLVGGHQPMETLTEYFGPYRIKLADL
CCCCEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCEEEEEEEE
IIITMCDEQICSREKLDDLLIKIHEINPNADIVPTIFRPHPVDDISNKNILFATTAPESV
EEEEECCHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCHHHH
QHLLKDYLEENFNCNVVAISSHLSNRPLLQRDIEENIDNIDCMLTELKAAAVDVATKDAL
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NKGLEVVYCDNIPIAINDEYDLDKSIMNIVYEAKESFNKKD
HCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSKNSMSVLCLVDGEHYFPVTKSAVDKIESKGYDVKLLLFIGGTEKLRDTNVDIISEMF
CCCCCCEEEEEEECCCEECCCCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCHHHHHHHH
NKPVLFGQDHSKVPYDLIEESIKEYDVGMVVDLSDEPVVNYSIRFNIATIALLNGCMYKG
CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEHHHEEHHHHHEECC
SDFEFKALEEEDVLNNPSYKIIGTGKRIGKTAVSAYTARLINKDSDFVPCVVAMGRGGPQ
CCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
IPEIVRGDKIHLTPKYLMEKSDKGFHAASDHWEDALMSRVLTVGCRRCAGGMAGMVYETN
CHHHHCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
MVEGAMMTNDLDVNLVALEGSGSAIPPVKADKQIVLVGGHQPMETLTEYFGPYRIKLADL
CCCCEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCEEEEEEEE
IIITMCDEQICSREKLDDLLIKIHEINPNADIVPTIFRPHPVDDISNKNILFATTAPESV
EEEEECCHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCHHHH
QHLLKDYLEENFNCNVVAISSHLSNRPLLQRDIEENIDNIDCMLTELKAAAVDVATKDAL
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NKGLEVVYCDNIPIAINDEYDLDKSIMNIVYEAKESFNKKD
HCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA