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The map label for this gene is nlpD [C]

Identifier: 83721288

GI number: 83721288

Start: 2501856

End: 2502734

Strand: Direct

Name: nlpD [C]

Synonym: BTH_I2225

Alternate gene names: 83721288

Gene position: 2501856-2502734 (Clockwise)

Preceding gene: 83719117

Following gene: 83721572

Centisome position: 65.68

GC content: 67.12

Gene sequence:

>879_bases
ATGCAAAACAATCGTTCGAAGGTTCCGCTCTCGCTCGCTCAGCGCGCGATTTGCATGGCGGCGCTCACGCTGCTCGCCGC
GTGCGCGACGCGGCTCGACCAGGCGCCCGTCGTCGACCGTTCCGGCTCGCTCGGCGCGACGGCCGCCACGCAGCCGCCCG
CGCCGCTGCCGCCCGCGCCCCCGGGTTACTACCGGGTGAAGCCGGGTGACACGCTTTATCGGATCGCGCTCGAGAACGGC
CAGAACTATCGCGACATCGCCGCGTGGAACAACCTGACCAACCCGAATCAGATCGAAGTTGATCAGCTGCTGCGCGTGTC
GCCGACCGCGGGCGGCGCGACGGCGGCCGCACCGGTCGCCGGCGCAGCAGTCACGCCGCCGCTGTCGAGCGGTCCGTCGA
GCGGCTCGGCCGCCGTGCCGCCGATCTATGGCTCCGGTTCCAGCGCGAGCGCCGCGCCGACTGCGTCGGCGGCGATCACG
CCGAGCGAAACGGGCGCGAGCGCCGCGAGCGGCAACGTGTCGTTCGCGTGGCCGGTGAGCGGCGCGCTGCTCAACACGTT
CGACGATTCGAAGAACAAGGGGATCAACATCGGCGGCCCGGCCGGCGAGGCCGTGAAGGCCGCTGCGGATGGCCGCGTGG
TGTACGCGGGCAACGGGCTGCGCGGCTATGGCAACCTCATTATCATCAAGCACGACGCAACTTATCTCACAGCGTATGCA
CACAATCGCGCTTTGATGGTAAAAGAGGGGGACGCGGTGACGAAAGGCCAGAAGATCGCAGAGATGGGCAATAGCGATTC
CGACCGCGTGATGCTGCATTTCGAGGTTCGCCGGCAGGGTAAACCTGTCGATCCGCTGAAGTATTTGCCGCCTCAATAA

Upstream 100 bases:

>100_bases
GCGTCGCACCCGCGCAGTGGCGTGAGTCGCGGCTTGATCGCGTTTTCTTTGTCCCTTTAAAATCCGGAGTGATTTGATAC
CGATGAGTATGCTGCGCGCG

Downstream 100 bases:

>100_bases
ACGAGACGACCATGCCGAAATCGAAGCGCCACGATCCGCAAGCCGAGTCTGAGAAGCTCAGTCGAGCCACGCAAGCATCG
GTGGAGCGAACGGGTGCTTC

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MQNNRSKVPLSLAQRAICMAALTLLAACATRLDQAPVVDRSGSLGATAATQPPAPLPPAPPGYYRVKPGDTLYRIALENG
QNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPVAGAAVTPPLSSGPSSGSAAVPPIYGSGSSASAAPTASAAIT
PSETGASAASGNVSFAWPVSGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYLTAYA
HNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_292_residues
MQNNRSKVPLSLAQRAICMAALTLLAACATRLDQAPVVDRSGSLGATAATQPPAPLPPAPPGYYRVKPGDTLYRIALENG
QNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPVAGAAVTPPLSSGPSSGSAAVPPIYGSGSSASAAPTASAAIT
PSETGASAASGNVSFAWPVSGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYLTAYA
HNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_292_residues
MQNNRSKVPLSLAQRAICMAALTLLAACATRLDQAPVVDRSGSLGATAATQPPAPLPPAPPGYYRVKPGDTLYRIALENG
QNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPVAGAAVTPPLSSGPSSGSAAVPPIYGSGSSASAAPTASAAIT
PSETGASAASGNVSFAWPVSGALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYLTAYA
HNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=262, Percent_Identity=37.7862595419847, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI87082174, Length=231, Percent_Identity=39.8268398268398, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI87082297, Length=143, Percent_Identity=37.7622377622378, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29911; Mature: 29911

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNNRSKVPLSLAQRAICMAALTLLAACATRLDQAPVVDRSGSLGATAATQPPAPLPPAP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPVA
CCCEEECCCCEEEEEEECCCCCEEEHHHHCCCCCCCEECHHHHEEECCCCCCCCCCCCCC
GAAVTPPLSSGPSSGSAAVPPIYGSGSSASAAPTASAAITPSETGASAASGNVSFAWPVS
CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCC
GALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYLTAYA
CEEEECCCCCCCCCEECCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEE
HNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
CCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MQNNRSKVPLSLAQRAICMAALTLLAACATRLDQAPVVDRSGSLGATAATQPPAPLPPAP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVSPTAGGATAAAPVA
CCCEEECCCCEEEEEEECCCCCEEEHHHHCCCCCCCEECHHHHEEECCCCCCCCCCCCCC
GAAVTPPLSSGPSSGSAAVPPIYGSGSSASAAPTASAAITPSETGASAASGNVSFAWPVS
CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCC
GALLNTFDDSKNKGINIGGPAGEAVKAAADGRVVYAGNGLRGYGNLIIIKHDATYLTAYA
CEEEECCCCCCCCCEECCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEE
HNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPLKYLPPQ
CCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]