| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is metH [H]
Identifier: 83719356
GI number: 83719356
Start: 396816
End: 399533
Strand: Reverse
Name: metH [H]
Synonym: BTH_I0357
Alternate gene names: 83719356
Gene position: 399533-396816 (Counterclockwise)
Preceding gene: 83720125
Following gene: 83721308
Centisome position: 10.49
GC content: 65.23
Gene sequence:
>2718_bases ATGACCGACCATACGATGCGCCTAGCCGGCCTCGAGCCGTTCAACGTCACGTCCGGGACGCTCTTCATCAACGTCGGCGA ACGCACCAACGTCACCGGCTCGAAGGCGTTCGCGCGGATGATCCTCAACGGCCAGTTCGACGAGGCGCTCGCCGTCGCGC GCCAGCAGGTCGAGAACGGCGCGCAGGTGATCGACATCAACATGGACGAGGCGATGCTCGATTCGAAGGCGGCGATGGTG CGCTTCCTGAATCTGATCGCGTCGGAGCCGGACATCGCGCGCGTGCCGATCATGATCGACTCGTCGAAGTGGGACGTGAT CGAAGCGGGCCTGAAGTGCGTGCAGGGCAAGGCGATCGTCAACTCGATCTCGCTGAAGGAAGGCGAGGAGGCGTTCGTGC ATCACGCGAAGCTGATCCGCCGCTACGGCGCGGCGAGCGTCGTGATGGCGTTCGACGAGCAGGGCCAGGCCGACACGTTC GCCCGCAAGACTGAAATCTGCAAGCGCTCGTACGACGTGCTCGTGAACCAATGCGGCTTCCCGCCCGAGGACATCATCTT CGACCCGAACATCTTCGCGGTCGCCACCGGCATCGAGGAGCACAACAACTACGCGGTCGACTTCATCGAGGCGACCCGCT GGATCAAGCAGAACCTGCCGTACGCGAAGGTGAGCGGCGGCGTGTCGAACGTGTCGTTCTCGTTTCGCGGCAACGATCCC GTGCGCGAGGCGATCCACACCGTGTTCCTCTATCACGCGATCCAGGCGGGGATGGACATGGGCATCGTCAACGCGGGCCA GCTCGGCGTGTACGCGGAACTCGACGCCGAGCTGCGCGAGCGCGTCGAGGACGTGATCCTGAACCGCCGCGCCGATTCGA CCGACCGCCTGCTGGAGATCGCCGACAAGTTCAAGACGGGCGCCGCGAAGAAGGAAGAGAACCTCGAGTGGCGCAACCAG CCGGTCGAGAAGCGGCTCGCGCACGCGCTCGTGCACGGGATCACGAACTTTATCGTCGAGGATACGGAAGAAGCGCGCGC GAAGATCGCCGCGGCCGGCGGCCGGCCGATCAACGTGATCGAAGGCCCGCTGATGGACGGAATGAACGTCGTCGGCGACC TGTTCGGCCAGGGCAAGATGTTCCTGCCGCAAGTCGTGAAATCGGCGCGCGTGATGAAGCAGGCGGTCGCGCACCTGATC CCGTTCATCGAGGAAGAAAAGCGCCTGCTCGCGGAGGCGGGCGGCGACGTGCGCGCGAAGGGCAAGATCGTGATCGCGAC CGTGAAGGGCGACGTGCACGACATCGGCAAGAACATCGTGTCGGTCGTGCTCCAGTGCAACAACTTCGAAGTGGTCAACA TGGGCGTGATGGTGCCGTGCAACGAGATCCTCGCGAAGGCGAAGGTCGAGGGCGCGGACATCGTCGGGCTGTCGGGCCTC ATCACGCCGAGCCTCGAGGAAATGGCCTACGTCGCCTCCGAGATGCAGCGCGACGACTACTTCCGCGTGAAGAAGATTCC GCTCTTGATCGGCGGCGCGACCACCTCGCGCGTGCACACCGCCGTGAAGATCGCGCCGAACTACGAAGGGCCCGTCGTTT ATGTTCCGGACGCGTCGCGCTCGGTGTCGGTCGCCTCGAGCCTGCTGTCCGACGAAGGCGCGGCCAAGTACCTCGACGAG CTGAAATCCGATTACGAGCGCATCCGCACGCAGCACGCCAACAAGAAGGCGCTGCCGCTCGTCACGCTCGACGAAGCGCG CGCGAACAAGACCAAGGTCGACTGGGCGAGCTACCAGCCGGTGAAGCCGAAGTTCATCGGCCGCCGCGTGTTCAAGAACT ACGATCTGAACGAGCTCGCGAACTACATCGATTGGGGCCCGTTCTTCCAGACCTGGGATCTCGCGGGTCCGTACCCGGCG ATCCTGAACGACGAGATCGTCGGCGAATCGGCGCGCCGCGTGTTCTCCGACGCGAAATCGATGCTCGCACGCCTGATCCA GGGCCGCTGGCTGACCGCGAACGGCGTGATCGCGCTGCTGCCGGCGAACACGGTCGGCGACGACGACATCGAGATCTACA CCGACGACACGCGCTCGGAAGTGCTGCTCACGTGGCGCAACCTGCGCCAGCAGAGCGTGCGTCCGGTGGTGGACGGCGTG ATGCGGCCGAACCGGTCGCTCGCCGACTTCATCGCGCCGAAGGATTCGGGCGTCGCCGACTATATCGGGATGTTCGCGGT GACGGCCGGGATCGGCGTCGACGCGAAGGAAAAGCAGTTCCTCGCCGATCACGACGATTACAGCGCGATCATGCTGAAGG CGCTCGCCGACCGGCTCGCGGAAGCGTTCGCCGAGGCGATGCACGCGCGCGTGCGCCGCGAGCTGTGGGGCTATGCGGCG GGCGAGCAGCTCGACAACGACGCGCTGATCGCCGAGAAATACGCGGGCATCCGCCCGGCGCCCGGCTACCCGGCATGCCC GGACCACCTCGTGAAGCGCGCAATGTTCGAAGCGCTTCATACAGACGAGATCGGGATGAGCATCACCGATTCGCTCGCGA TGCTGCCGGCCGCGAGCGTCTCCGGCTTCTATCTCGCGCATCCGGACAGCACGTACTTCTCGGTCGGCAAGATCAGCCAG GACCAGCTCGAGGATTTCGCGCGCCGGATGGCGCTGTCGAAGGCGGACGCCGAGCGCGCGCTCGCGCCGCTGCTCTGA
Upstream 100 bases:
>100_bases GCTCGCCGAGGTCAAGCCGCGCCGCTGGCCGAGCCAGTACAGCGAAGCCGCCTGACGCGCGCCGCCCTCCCCACTCCAAC CCGAATACGCACGCACCGCC
Downstream 100 bases:
>100_bases CGGACAGTGCGCGCGCGGCGGCCGTGCGACGGCATGCGCCGGGGCCGGCGGCGGGGCTCGCCCGGAGCCGGAGCCGGAAC CGCCGATGGCGACGACGGCC
Product: 5-methyltetrahydrofolate--homocysteine methyltransferase
Products: NA
Alternate protein names: 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12 dependent; MS [H]
Number of amino acids: Translated: 905; Mature: 904
Protein sequence:
>905_residues MTDHTMRLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNGQFDEALAVARQQVENGAQVIDINMDEAMLDSKAAMV RFLNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIVNSISLKEGEEAFVHHAKLIRRYGAASVVMAFDEQGQADTF ARKTEICKRSYDVLVNQCGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDP VREAIHTVFLYHAIQAGMDMGIVNAGQLGVYAELDAELRERVEDVILNRRADSTDRLLEIADKFKTGAAKKEENLEWRNQ PVEKRLAHALVHGITNFIVEDTEEARAKIAAAGGRPINVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLI PFIEEEKRLLAEAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGL ITPSLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVSVASSLLSDEGAAKYLDE LKSDYERIRTQHANKKALPLVTLDEARANKTKVDWASYQPVKPKFIGRRVFKNYDLNELANYIDWGPFFQTWDLAGPYPA ILNDEIVGESARRVFSDAKSMLARLIQGRWLTANGVIALLPANTVGDDDIEIYTDDTRSEVLLTWRNLRQQSVRPVVDGV MRPNRSLADFIAPKDSGVADYIGMFAVTAGIGVDAKEKQFLADHDDYSAIMLKALADRLAEAFAEAMHARVRRELWGYAA GEQLDNDALIAEKYAGIRPAPGYPACPDHLVKRAMFEALHTDEIGMSITDSLAMLPAASVSGFYLAHPDSTYFSVGKISQ DQLEDFARRMALSKADAERALAPLL
Sequences:
>Translated_905_residues MTDHTMRLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNGQFDEALAVARQQVENGAQVIDINMDEAMLDSKAAMV RFLNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIVNSISLKEGEEAFVHHAKLIRRYGAASVVMAFDEQGQADTF ARKTEICKRSYDVLVNQCGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDP VREAIHTVFLYHAIQAGMDMGIVNAGQLGVYAELDAELRERVEDVILNRRADSTDRLLEIADKFKTGAAKKEENLEWRNQ PVEKRLAHALVHGITNFIVEDTEEARAKIAAAGGRPINVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLI PFIEEEKRLLAEAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGL ITPSLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVSVASSLLSDEGAAKYLDE LKSDYERIRTQHANKKALPLVTLDEARANKTKVDWASYQPVKPKFIGRRVFKNYDLNELANYIDWGPFFQTWDLAGPYPA ILNDEIVGESARRVFSDAKSMLARLIQGRWLTANGVIALLPANTVGDDDIEIYTDDTRSEVLLTWRNLRQQSVRPVVDGV MRPNRSLADFIAPKDSGVADYIGMFAVTAGIGVDAKEKQFLADHDDYSAIMLKALADRLAEAFAEAMHARVRRELWGYAA GEQLDNDALIAEKYAGIRPAPGYPACPDHLVKRAMFEALHTDEIGMSITDSLAMLPAASVSGFYLAHPDSTYFSVGKISQ DQLEDFARRMALSKADAERALAPLL >Mature_904_residues TDHTMRLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNGQFDEALAVARQQVENGAQVIDINMDEAMLDSKAAMVR FLNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIVNSISLKEGEEAFVHHAKLIRRYGAASVVMAFDEQGQADTFA RKTEICKRSYDVLVNQCGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDPV REAIHTVFLYHAIQAGMDMGIVNAGQLGVYAELDAELRERVEDVILNRRADSTDRLLEIADKFKTGAAKKEENLEWRNQP VEKRLAHALVHGITNFIVEDTEEARAKIAAAGGRPINVIEGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIP FIEEEKRLLAEAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGLI TPSLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVSVASSLLSDEGAAKYLDEL KSDYERIRTQHANKKALPLVTLDEARANKTKVDWASYQPVKPKFIGRRVFKNYDLNELANYIDWGPFFQTWDLAGPYPAI LNDEIVGESARRVFSDAKSMLARLIQGRWLTANGVIALLPANTVGDDDIEIYTDDTRSEVLLTWRNLRQQSVRPVVDGVM RPNRSLADFIAPKDSGVADYIGMFAVTAGIGVDAKEKQFLADHDDYSAIMLKALADRLAEAFAEAMHARVRRELWGYAAG EQLDNDALIAEKYAGIRPAPGYPACPDHLVKRAMFEALHTDEIGMSITDSLAMLPAASVSGFYLAHPDSTYFSVGKISQD QLEDFARRMALSKADAERALAPLL
Specific function: Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate [H]
COG id: COG1410
COG function: function code E; Methionine synthase I, cobalamin-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pterin-binding domain [H]
Homologues:
Organism=Homo sapiens, GI169790923, Length=918, Percent_Identity=54.5751633986928, Blast_Score=976, Evalue=0.0, Organism=Escherichia coli, GI1790450, Length=904, Percent_Identity=62.8318584070796, Blast_Score=1113, Evalue=0.0, Organism=Caenorhabditis elegans, GI17535405, Length=912, Percent_Identity=54.2763157894737, Blast_Score=946, Evalue=0.0,
Paralogues:
None
Copy number: 513 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1320 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR011005 - InterPro: IPR003759 - InterPro: IPR011822 - InterPro: IPR000489 - InterPro: IPR003726 - InterPro: IPR004223 [H]
Pfam domain/function: PF02310 B12-binding; PF02607 B12-binding_2; PF02965 Met_synt_B12; PF00809 Pterin_bind; PF02574 S-methyl_trans [H]
EC number: =2.1.1.13 [H]
Molecular weight: Translated: 99526; Mature: 99395
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50974 ADOMET_ACTIVATION ; PS50972 PTERIN_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDHTMRLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNGQFDEALAVARQQVENG CCCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC AQVIDINMDEAMLDSKAAMVRFLNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIV CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHH NSISLKEGEEAFVHHAKLIRRYGAASVVMAFDEQGQADTFARKTEICKRSYDVLVNQCGF HHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC PPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDP CCHHEEECCCCEEEEECCHHCCCEEEHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCH VREAIHTVFLYHAIQAGMDMGIVNAGQLGVYAELDAELRERVEDVILNRRADSTDRLLEI HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCHHHHHHH ADKFKTGAAKKEENLEWRNQPVEKRLAHALVHGITNFIVEDTEEARAKIAAAGGRPINVI HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE EGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRLLAEAGGDVRAK CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC GKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGL CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHCCCCCEECCCCC ITPSLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASR CCCCHHHHHHHHHHHCCCCCEEEEECEEEEECCCHHHEEEEEEECCCCCCCEEECCCCCC SVSVASSLLSDEGAAKYLDELKSDYERIRTQHANKKALPLVTLDEARANKTKVDWASYQP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCC VKPKFIGRRVFKNYDLNELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDAKS CCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHH MLARLIQGRWLTANGVIALLPANTVGDDDIEIYTDDTRSEVLLTWRNLRQQSVRPVVDGV HHHHHHCCCEEECCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MRPNRSLADFIAPKDSGVADYIGMFAVTAGIGVDAKEKQFLADHDDYSAIMLKALADRLA HCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH EAFAEAMHARVRRELWGYAAGEQLDNDALIAEKYAGIRPAPGYPACPDHLVKRAMFEALH HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH TDEIGMSITDSLAMLPAASVSGFYLAHPDSTYFSVGKISQDQLEDFARRMALSKADAERA HCCCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH LAPLL HCCCC >Mature Secondary Structure TDHTMRLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNGQFDEALAVARQQVENG CCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC AQVIDINMDEAMLDSKAAMVRFLNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIV CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHH NSISLKEGEEAFVHHAKLIRRYGAASVVMAFDEQGQADTFARKTEICKRSYDVLVNQCGF HHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC PPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDP CCHHEEECCCCEEEEECCHHCCCEEEHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCH VREAIHTVFLYHAIQAGMDMGIVNAGQLGVYAELDAELRERVEDVILNRRADSTDRLLEI HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCHHHHHHH ADKFKTGAAKKEENLEWRNQPVEKRLAHALVHGITNFIVEDTEEARAKIAAAGGRPINVI HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE EGPLMDGMNVVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRLLAEAGGDVRAK CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC GKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGL CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHCCCCCEECCCCC ITPSLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASR CCCCHHHHHHHHHHHCCCCCEEEEECEEEEECCCHHHEEEEEEECCCCCCCEEECCCCCC SVSVASSLLSDEGAAKYLDELKSDYERIRTQHANKKALPLVTLDEARANKTKVDWASYQP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCC VKPKFIGRRVFKNYDLNELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDAKS CCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHH MLARLIQGRWLTANGVIALLPANTVGDDDIEIYTDDTRSEVLLTWRNLRQQSVRPVVDGV HHHHHHCCCEEECCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MRPNRSLADFIAPKDSGVADYIGMFAVTAGIGVDAKEKQFLADHDDYSAIMLKALADRLA HCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH EAFAEAMHARVRRELWGYAAGEQLDNDALIAEKYAGIRPAPGYPACPDHLVKRAMFEALH HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH TDEIGMSITDSLAMLPAASVSGFYLAHPDSTYFSVGKISQDQLEDFARRMALSKADAERA HCCCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH LAPLL HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]