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The map label for this gene is dapD

Identifier: 83594808

GI number: 83594808

Start: 4004094

End: 4004945

Strand: Direct

Name: dapD

Synonym: Rru_A3479

Alternate gene names: 83594808

Gene position: 4004094-4004945 (Clockwise)

Preceding gene: 83594806

Following gene: 83594809

Centisome position: 91.99

GC content: 69.6

Gene sequence:

>852_bases
ATGACCACGCCGAGCTTGCAGACCACCATCGAGGCCGCCTGGGAGAGCCGCGAGGGCGTGACCCTGGAGACGCGGGGAGC
CGTGCGCGACGCGGTCGAGGCCGTGCTCGACGGCCTGGACGCCGGGATCTATCGCGTCGCCGAAAAGATCGGCGAGACCT
GGGTTGTCCATCAGTGGCTGAAGATGGCGGTGCTGCTGTCCTTCCGCCTCAACGACATGACACCGGTTTCCGGCGCGCCG
GGCGGCGCCACCTGGTGGGACAAGGTTCCCTCCAAATTCGCCGGCTGGGGGGAAGACCGCTTCCGCGCCGCCGGATTCCG
CGCCGTTCCCGGCGCCATCGTCCGCCGCTCGGCCCATATCGCGCCGGGCGTCGTGCTGATGCCCAGCTTCGTCAACCTCG
GCGCCCGCGTCGAATCCGGGGCGATGATCGACACCTGGGCGACCGTGGGGTCTTGCGCCCAGATCGGGCGCAACGTTCAT
CTGTCGGGCGGGGCGGGGATCGGCGGCGTGCTGGAACCCCTTCAGGCCGGTCCGGTGATCATCGAAGACAACTGCTTCAT
CGGCGCCCGCTCCGAGGTCGCCGAGGGGGTGCTGGTGGAAACCGGCGCCGTGCTGTCGATGGGCGTGTTCATCGGCGCCT
CGACCCGCGTCATCGATCGTGAGACCGGCGAGGTCTTCATGGGCCGGGTTCCGGCCTATTCGGTGGTGGTGCCGGGATCG
CTGCCCGGTAAGCCGCTGCCCGATGGCACGCCGGGCCCCGGTCTGGCCTGCGCGGTGATCGTCAAGCGGGTCGACGAGCG
CACCCGCTCCAAGGTCTCGATCAACGATCTGCTGCGCGATACCCCGCGCTGA

Upstream 100 bases:

>100_bases
GACTTGGACAACCGGCCGGCTATGGTTGACCACCATCCACGACTATCGGATCCTTTTCAACCGCCCCGACCGGGGCTTCG
CCCAGGGACACCCGCGCGCC

Downstream 100 bases:

>100_bases
AGGCCCGCGTTGAAGGAACGTCCGCCCTTGTCTGCGCTTCCCCTTCGCTGGACTGCGGCCGAATTGGCCGATCCCTTGGC
TTTGGCCCGGGCGCTGGTGG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTTPSLQTTIEAAWESREGVTLETRGAVRDAVEAVLDGLDAGIYRVAEKIGETWVVHQWLKMAVLLSFRLNDMTPVSGAP
GGATWWDKVPSKFAGWGEDRFRAAGFRAVPGAIVRRSAHIAPGVVLMPSFVNLGARVESGAMIDTWATVGSCAQIGRNVH
LSGGAGIGGVLEPLQAGPVIIEDNCFIGARSEVAEGVLVETGAVLSMGVFIGASTRVIDRETGEVFMGRVPAYSVVVPGS
LPGKPLPDGTPGPGLACAVIVKRVDERTRSKVSINDLLRDTPR

Sequences:

>Translated_283_residues
MTTPSLQTTIEAAWESREGVTLETRGAVRDAVEAVLDGLDAGIYRVAEKIGETWVVHQWLKMAVLLSFRLNDMTPVSGAP
GGATWWDKVPSKFAGWGEDRFRAAGFRAVPGAIVRRSAHIAPGVVLMPSFVNLGARVESGAMIDTWATVGSCAQIGRNVH
LSGGAGIGGVLEPLQAGPVIIEDNCFIGARSEVAEGVLVETGAVLSMGVFIGASTRVIDRETGEVFMGRVPAYSVVVPGS
LPGKPLPDGTPGPGLACAVIVKRVDERTRSKVSINDLLRDTPR
>Mature_282_residues
TTPSLQTTIEAAWESREGVTLETRGAVRDAVEAVLDGLDAGIYRVAEKIGETWVVHQWLKMAVLLSFRLNDMTPVSGAPG
GATWWDKVPSKFAGWGEDRFRAAGFRAVPGAIVRRSAHIAPGVVLMPSFVNLGARVESGAMIDTWATVGSCAQIGRNVHL
SGGAGIGGVLEPLQAGPVIIEDNCFIGARSEVAEGVLVETGAVLSMGVFIGASTRVIDRETGEVFMGRVPAYSVVVPGSL
PGKPLPDGTPGPGLACAVIVKRVDERTRSKVSINDLLRDTPR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family

Homologues:

Organism=Escherichia coli, GI1786362, Length=276, Percent_Identity=63.0434782608696, Blast_Score=312, Evalue=2e-86,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): DAPD_RHORT (Q2RNM2)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428560.1
- ProteinModelPortal:   Q2RNM2
- SMR:   Q2RNM2
- STRING:   Q2RNM2
- GeneID:   3836932
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3479
- NMPDR:   fig|1085.1.peg.2018
- eggNOG:   COG2171
- HOGENOM:   HBG704071
- OMA:   QWAKKAV
- PhylomeDB:   Q2RNM2
- ProtClustDB:   PRK11830
- BioCyc:   RRUB269796:RRU_A3479-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00811
- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004
- Gene3D:   G3DSA:1.10.166.10
- TIGRFAMs:   TIGR00965

Pfam domain/function: SSF51161 Trimer_LpxA_like

EC number: =2.3.1.117

Molecular weight: Translated: 29826; Mature: 29694

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: BINDING 107-107 BINDING 144-144

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPSLQTTIEAAWESREGVTLETRGAVRDAVEAVLDGLDAGIYRVAEKIGETWVVHQWL
CCCCCHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KMAVLLSFRLNDMTPVSGAPGGATWWDKVPSKFAGWGEDRFRAAGFRAVPGAIVRRSAHI
HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHCCCCCCCHHHHHHCCCC
APGVVLMPSFVNLGARVESGAMIDTWATVGSCAQIGRNVHLSGGAGIGGVLEPLQAGPVI
CCCEEEHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCEE
IEDNCFIGARSEVAEGVLVETGAVLSMGVFIGASTRVIDRETGEVFMGRVPAYSVVVPGS
EECCCEECCHHHHHCCEEEECCHHHHHHHHHCCCCEEEECCCCCEEECCCCEEEEEECCC
LPGKPLPDGTPGPGLACAVIVKRVDERTRSKVSINDLLRDTPR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
>Mature Secondary Structure 
TTPSLQTTIEAAWESREGVTLETRGAVRDAVEAVLDGLDAGIYRVAEKIGETWVVHQWL
CCCCHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KMAVLLSFRLNDMTPVSGAPGGATWWDKVPSKFAGWGEDRFRAAGFRAVPGAIVRRSAHI
HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHCCCCCCCHHHHHHCCCC
APGVVLMPSFVNLGARVESGAMIDTWATVGSCAQIGRNVHLSGGAGIGGVLEPLQAGPVI
CCCEEEHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCEE
IEDNCFIGARSEVAEGVLVETGAVLSMGVFIGASTRVIDRETGEVFMGRVPAYSVVVPGS
EECCCEECCHHHHHCCEEEECCHHHHHHHHHCCCCEEEECCCCCEEECCCCEEEEEECCC
LPGKPLPDGTPGPGLACAVIVKRVDERTRSKVSINDLLRDTPR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA