Click here to switch to the map view.

The map label for this gene is ygaY [H]

Identifier: 83594806

GI number: 83594806

Start: 4000911

End: 4002128

Strand: Direct

Name: ygaY [H]

Synonym: Rru_A3477

Alternate gene names: 83594806

Gene position: 4000911-4002128 (Clockwise)

Preceding gene: 83594804

Following gene: 83594808

Centisome position: 91.92

GC content: 70.94

Gene sequence:

>1218_bases
ATGTCCGAACCCGCCGTATTCCCCTCTCCCCGGCCCGCCCTTGGTCGCGGGGCGACCTTCGCCATGGCCGCCGCCGCTGG
GCTGGCCGTCGCCAACATCTACTATAATCAGCCGATGCTCGGCCTCATCGAAGACGCCTTCCCCGGCTCGGCCAGCCCGG
GCCTGATCCCGACGGTGACCCAATTGGGCTATGCCCTGGGTTTGTTTCTGCTGGTGCCGCTGGGGGATCTTGTCGACCGG
CGGCGTCTGATCATCGGCCAGTTCCTGGCTTTGGCCGCGACGCTTTGTCTGACGGCGCTGGCGCCAACGGCCGGGGTGCT
GGTCGGCGCCTCGCTACTGGTTGGCGCCGGGGCGACGGTGGCCCAGCATATCGTGCCGTTTGCCGCCGCCCTGGCGCCCG
ACGGCCAGCGCGGGCGGATCATCGGCACGGTGATGGGCGGGCTGCTTTGCGGGATCTTGCTCAGCCGGACCCTGGCCGGC
GTCGTCGCCACCCATCTGGGATGGCGCGAGATGTTCTGGCTGGGCGTGCCGCTGGTCCTGGCCGCCGCCGGGTTGATGGC
CGCCGTGCTGCCGCGCCGGGTCGTTCCGCCGCAGGGCCTGCGCTACGGCCAAGCCTTGCGTTCGCTCGCCCATCTCTGGC
GCGACGAACCGGCCCTGCGGCGGGCGACGCTGACGCAGGCCGCCCTCTTTGGCTCGTTCTCGGTCTTCTGGACGGTTCTG
GCGCTTCATCTGCAAGAGCCCGCCCTGGGGCTGGGCGCCGATGTCGCCGGCCTGTTCGGGGTTATCGGCGCGGTCGGGGT
GGTGGCGGCGCCGCTGGCCGGGCGGCTGGCCGATCATCGCGGACCGGGGCCGGTGATCGTCCTCGGCGCGTCGCTGGTTC
TGGTGTCCTGGGCGATTGTCGCCCTGTGGGCAAGCGTCCTTGGGCTGGTGGTCGGCGTCATCGCCCTTGATCTCGGCACT
CAAAGCGCCCTGGTGTCCAATCAGCATGTGGTCTATGCGCTGCGCCCCGAGGCGCGCAGCCGCCTCAACACCGTATTCAT
GAGCGGTATGTTCCTGGGAGGCGCCGGCGGATCGGCCGGGGCGACCCTGGCCTGGAGCTTGGGCGGCTGGGCGGCGGTCA
GCGGCTATGGCGCCGGGCTGGCGATCCTCGCCCTGGGGATCTTGCGCCTTGGCCGGCCGATCAGGTCGGAGTGTGCGGCG
GCGGCAGCGACAGACTGA

Upstream 100 bases:

>100_bases
CTTTCCGATATACAGGCTGCTCACTTCCACCACCTACACGAAAACCGTTGAGGGGGCTATCACTTCGGCATCCCAGATCC
CGCCAAAAAGGTCGCGCCCC

Downstream 100 bases:

>100_bases
AGCGCCCCTTGCCGCCGTGTTTGGCGGCATACATGGCCATATCGGCCCGCGCCGTCAGATCCTCCACTCCCTCGCCCGAG
GCCGGATCATGGATGGCCAG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVTQLGYALGLFLLVPLGDLVDR
RRLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATVAQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAG
VVATHLGWREMFWLGVPLVLAAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVL
ALHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIVALWASVLGLVVGVIALDLGT
QSALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAGATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAA
AAATD

Sequences:

>Translated_405_residues
MSEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVTQLGYALGLFLLVPLGDLVDR
RRLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATVAQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAG
VVATHLGWREMFWLGVPLVLAAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVL
ALHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIVALWASVLGLVVGVIALDLGT
QSALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAGATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAA
AAATD
>Mature_404_residues
SEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVTQLGYALGLFLLVPLGDLVDRR
RLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATVAQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAGV
VATHLGWREMFWLGVPLVLAAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVLA
LHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIVALWASVLGLVVGVIALDLGTQ
SALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAGATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAAA
AATD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41159; Mature: 41028

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHH
QLGYALGLFLLVPLGDLVDRRRLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
AQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAGVVATHLGWREMFWLGVPLVL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
ALWASVLGLVVGVIALDLGTQSALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAG
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCC
ATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAAAAATD
CEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHH
QLGYALGLFLLVPLGDLVDRRRLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
AQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAGVVATHLGWREMFWLGVPLVL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
ALWASVLGLVVGVIALDLGTQSALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAG
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCC
ATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAAAAATD
CEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]