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The map label for this gene is dapE [H]

Identifier: 83594809

GI number: 83594809

Start: 4004973

End: 4006187

Strand: Direct

Name: dapE [H]

Synonym: Rru_A3480

Alternate gene names: 83594809

Gene position: 4004973-4006187 (Clockwise)

Preceding gene: 83594808

Following gene: 83594810

Centisome position: 92.01

GC content: 66.67

Gene sequence:

>1215_bases
TTGTCTGCGCTTCCCCTTCGCTGGACTGCGGCCGAATTGGCCGATCCCTTGGCTTTGGCCCGGGCGCTGGTGGCTTGCCC
CAGCGTCACCCCGCGTGATGCCGGGGCCCTTGATGTTCTTGAATCCGCCCTGATCGCCTTGGGCTTCCGCTGCGTTCGCC
TGCCCTTTGGCGCCGAGGGCGGCGAGAGGGTGGATAATCTGTATGCCCGCCGCGGCGGCGCCGGCCCCTGTTTCGGATTC
GCCGGCCATACGGATGTCGTGCCCGCCGGCGACGGCTGGAGCCGGCCGCCCTTTGGCGCCGAAGTGGTCGATGGTGCCCT
GGTCGGCCGGGGAGCGGCCGATATGAAAGGCGGCATCGCCTGTTTCGTCGCCGCCGTCGCCCGGTTGATTTCCGGACCCG
ATTCCACGGGATCGATTTCCAGACACGATCCCACGGGATCGATCGCCCTGCTGATCACCGGCGACGAGGAGGGCCCCGCC
CTTCACGGCACCCGCAAGGTGCTGGAGTGGATGGAGGGGGCTGGCGAAAGGATGGATCTGTGTTTGGTTGGCGAGCCGAC
CAATCCCGAAGGCCTGGGCGACATGATCAAGATCGGTCGGAGGGGCAGCCTGACCGCCACCGTCACCCTTCTCGGCCGCG
CCGGCCATGTCGCCTATCCCCATCTCGCCGATAACCCCCTTCATCGGCTCTCGACGTTGACCGGCCTGCTGCTGGCCGAG
ACCCTGGACGACGGCACGGCGCATTTCCAGCCTTCTAGCCTGCAGCTGACCAGCATCGATGTCGGCAATCCGGCCGCCAA
TGTCATTCCCGCCAAGGCCACCTTGCGCTTCAATATCCGCTTCAACGATCGCCATAGCGGCGAGTCGCTGTCGGCCTGGA
TCCGCGCCCGCTGTCTGGCGGCCTGCGATGGCGACGAAAGCGGCTTTTCCCTGGTTTTGGAGCATAGCGGCGATGCCTTC
CTGACGCCGCCCGGCCCGCTGTCGGATCTGATCGCCACGGCCTGTCAGGCGGTCACCGGCCGGCGGCCGGAGCTGTCGAC
CTCGGGCGGCACCTCCGATGCCCGTTTCATTCGCAGCCATTGCCCGGTGGCCGAATTCGGTCTGGTCGGGCGAACCATGC
ACAAGCCCGATGAACGGGTGGCGGTGGCCGATCTCGAAGCCTTAAGCGAGATCTACCGCCGGGTTCTGGTCGGTTTCTTC
GAGGCCCCATGCTGA

Upstream 100 bases:

>100_bases
CGTCAAGCGGGTCGACGAGCGCACCCGCTCCAAGGTCTCGATCAACGATCTGCTGCGCGATACCCCGCGCTGAAGGCCCG
CGTTGAAGGAACGTCCGCCC

Downstream 100 bases:

>100_bases
GCGCCCCCCAGGCGGCGAAGGTGCTTTGGGGGGTGGGCCGCCTGTTGCGGTTCGATCCCCAGGGACTGAAGGCCTTTGAC
GGCTCCCCCCAGGACGCCCT

Product: succinyl-diaminopimelate desuccinylase

Products: NA

Alternate protein names: SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSALPLRWTAAELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYARRGGAGPCFGF
AGHTDVVPAGDGWSRPPFGAEVVDGALVGRGAADMKGGIACFVAAVARLISGPDSTGSISRHDPTGSIALLITGDEEGPA
LHGTRKVLEWMEGAGERMDLCLVGEPTNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAE
TLDDGTAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDESGFSLVLEHSGDAF
LTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSHCPVAEFGLVGRTMHKPDERVAVADLEALSEIYRRVLVGFF
EAPC

Sequences:

>Translated_404_residues
MSALPLRWTAAELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYARRGGAGPCFGF
AGHTDVVPAGDGWSRPPFGAEVVDGALVGRGAADMKGGIACFVAAVARLISGPDSTGSISRHDPTGSIALLITGDEEGPA
LHGTRKVLEWMEGAGERMDLCLVGEPTNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAE
TLDDGTAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDESGFSLVLEHSGDAF
LTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSHCPVAEFGLVGRTMHKPDERVAVADLEALSEIYRRVLVGFF
EAPC
>Mature_403_residues
SALPLRWTAAELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYARRGGAGPCFGFA
GHTDVVPAGDGWSRPPFGAEVVDGALVGRGAADMKGGIACFVAAVARLISGPDSTGSISRHDPTGSIALLITGDEEGPAL
HGTRKVLEWMEGAGERMDLCLVGEPTNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAET
LDDGTAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDESGFSLVLEHSGDAFL
TPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSHCPVAEFGLVGRTMHKPDERVAVADLEALSEIYRRVLVGFFE
APC

Specific function: Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bact

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788816, Length=383, Percent_Identity=42.0365535248042, Blast_Score=278, Evalue=7e-76,
Organism=Escherichia coli, GI1790395, Length=404, Percent_Identity=25.7425742574257, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005941
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 42256; Mature: 42125

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALPLRWTAAELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEG
CCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCC
GERVDNLYARRGGAGPCFGFAGHTDVVPAGDGWSRPPFGAEVVDGALVGRGAADMKGGIA
HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCHHHCCCCHHHCCHHH
CFVAAVARLISGPDSTGSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDL
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
CLVGEPTNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAE
EEEECCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHH
TLDDGTAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLA
HCCCCCCCCCCCCEEEEEEECCCCCCCEEECEEEEEEEEEECCCCCCHHHHHHHHHHHHH
ACDGDESGFSLVLEHSGDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSH
HCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
CPVAEFGLVGRTMHKPDERVAVADLEALSEIYRRVLVGFFEAPC
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SALPLRWTAAELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEG
CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCC
GERVDNLYARRGGAGPCFGFAGHTDVVPAGDGWSRPPFGAEVVDGALVGRGAADMKGGIA
HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCHHHCCCCHHHCCHHH
CFVAAVARLISGPDSTGSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDL
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
CLVGEPTNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAE
EEEECCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHH
TLDDGTAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLA
HCCCCCCCCCCCCEEEEEEECCCCCCCEEECEEEEEEEEEECCCCCCHHHHHHHHHHHHH
ACDGDESGFSLVLEHSGDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSH
HCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
CPVAEFGLVGRTMHKPDERVAVADLEALSEIYRRVLVGFFEAPC
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA