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The map label for this gene is yeaM [H]

Identifier: 83594458

GI number: 83594458

Start: 3607050

End: 3607835

Strand: Direct

Name: yeaM [H]

Synonym: Rru_A3128

Alternate gene names: 83594458

Gene position: 3607050-3607835 (Clockwise)

Preceding gene: 83594456

Following gene: 83594462

Centisome position: 82.87

GC content: 67.81

Gene sequence:

>786_bases
ATGCCCAATCTCACGCTACCGTTCGCTTTCGTCGATGTCGCCGATGGACCGATCGTGATCGCCGCGGCCGGGAGTCAGGG
GCGCGAACTGGTTTCGCCCCCCCATCACCACGCCCGGGGGCAACTGTTCGGATCGACGCGCGGGCTGGTGTCGGTCTCCG
TCGAGGCCGGGGTTTGGGTTGTCCCGGCCATCCATGCGGTATGGCTGCCGCCCAACCATGTCCATTGGGGCCGGTCCCAC
GGGCCGTTCGATGGCTGGAGCGTCTATATCGCCCCGGCGGCCTGCCAGGATTTGCCAAGCAGCCCTTGCACCATCCGCAC
CTCGGGCCTGCTGCGCGAAGCGGTCCTGCGCGCCGCGACATGGCCCCTGGAGCCCTTCGTCCCGCTCGACGAACAGAAGG
CCCATGTGGCCGCCGTGCTGCTTGATGAAATAAGGAACCTGCCGGTCGAACCCTTCGGCCTGCCCCTGCCCCGCGACCCG
CGACTGGAGCGGATCGCCCGCGCCCTGATCGCCGATCCGGCCGATGAGCGCGATTTCGAAGCCTGGGCCCGTTGGGCGGC
GATCAGTCCGCGCAGCCTGGGCCGACGCTTCGTCACCGAGACGGGCTTCACCTTCACCGCATGGCGCCAACGCGCCCGGC
TGATGCGCTCATTGGAAATGCTGGCCACCGACCTGCCGGTGACGACCATCGCCCTGGATCTGGGCTATGCGACGGCCAGC
GCCTTCATCAGCCTGTTTCGCCGCACCTTCGGGGAAACCCCGGCAGTCTATCGCCGGCGTTTCTAA

Upstream 100 bases:

>100_bases
CGCCTCTCTAGCACTGGGTTATCCGCTTTCTTCGCCCAGGCTAGCGCAAGATTTTTGGCGACTGTAAGCTATGGGCGCCA
TTTGATAGCGAAATGCCGCC

Downstream 100 bases:

>100_bases
TCAAGGGTTTTGCGGAAGACCTTCAGGGCGATGGCGAAGGCGACCAGGGTGAACAGGGCCTGGGGCCAGAGTTCGGGCCA
GACCTGCCAAAAGCCGTTGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MPNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLVSVSVEAGVWVVPAIHAVWLPPNHVHWGRSH
GPFDGWSVYIAPAACQDLPSSPCTIRTSGLLREAVLRAATWPLEPFVPLDEQKAHVAAVLLDEIRNLPVEPFGLPLPRDP
RLERIARALIADPADERDFEAWARWAAISPRSLGRRFVTETGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATAS
AFISLFRRTFGETPAVYRRRF

Sequences:

>Translated_261_residues
MPNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLVSVSVEAGVWVVPAIHAVWLPPNHVHWGRSH
GPFDGWSVYIAPAACQDLPSSPCTIRTSGLLREAVLRAATWPLEPFVPLDEQKAHVAAVLLDEIRNLPVEPFGLPLPRDP
RLERIARALIADPADERDFEAWARWAAISPRSLGRRFVTETGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATAS
AFISLFRRTFGETPAVYRRRF
>Mature_260_residues
PNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLVSVSVEAGVWVVPAIHAVWLPPNHVHWGRSHG
PFDGWSVYIAPAACQDLPSSPCTIRTSGLLREAVLRAATWPLEPFVPLDEQKAHVAAVLLDEIRNLPVEPFGLPLPRDPR
LERIARALIADPADERDFEAWARWAAISPRSLGRRFVTETGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATASA
FISLFRRTFGETPAVYRRRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=237, Percent_Identity=32.0675105485232, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28851; Mature: 28720

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLVSVSVEAGVWV
CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCEEE
VPAIHAVWLPPNHVHWGRSHGPFDGWSVYIAPAACQDLPSSPCTIRTSGLLREAVLRAAT
EECCEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEHHHHHHHHHHHHHC
WPLEPFVPLDEQKAHVAAVLLDEIRNLPVEPFGLPLPRDPRLERIARALIADPADERDFE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
AWARWAAISPRSLGRRFVTETGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATAS
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEHHHHHHHH
AFISLFRRTFGETPAVYRRRF
HHHHHHHHHHCCCHHHHHCCC
>Mature Secondary Structure 
PNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLVSVSVEAGVWV
CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCEEE
VPAIHAVWLPPNHVHWGRSHGPFDGWSVYIAPAACQDLPSSPCTIRTSGLLREAVLRAAT
EECCEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEHHHHHHHHHHHHHC
WPLEPFVPLDEQKAHVAAVLLDEIRNLPVEPFGLPLPRDPRLERIARALIADPADERDFE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
AWARWAAISPRSLGRRFVTETGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATAS
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEHHHHHHHH
AFISLFRRTFGETPAVYRRRF
HHHHHHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]