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The map label for this gene is spsC [H]

Identifier: 83594078

GI number: 83594078

Start: 3178704

End: 3179894

Strand: Reverse

Name: spsC [H]

Synonym: Rru_A2746

Alternate gene names: 83594078

Gene position: 3179894-3178704 (Counterclockwise)

Preceding gene: 83594079

Following gene: 83594077

Centisome position: 73.05

GC content: 67.34

Gene sequence:

>1191_bases
ATGGGCATAAGCGAGTTCAAGCCCCTGTCGCCACCCGCCGTGGTCGACGCCCCGATCGCTTTTGGCCGGCCGTCCTTGGG
CGCCGCCGAGATCGAGGCCGTCGCCAAGGTCCTCGCCTCGGGGTGGATCGGCATGGGCGAGCAGACCCTGGCCTTTGAGC
GCGACCTGGGCGCGCGCATCGGCTGTCCGCATACGGTCTTGCTCAATTCCTGCACTTCGGCCTTGTTCCTTTCCCTGCAT
ATGCACGCCATAGGCGCGGGCGACGAGGTCGTGCTTCCCAGTCTGAACTGGTTTTCCGCAGCCAATGCCAGCTTGTGGCT
GGGCGCCCGCCCGGCCTTTTGCGATGTCGATGAAGAAACCTTATGCGTCACCCCGGAAACCGTCGCGGCGGCGCTGACGC
CGCGCACCCGCGCCGTGGTCGTCGTCCACATGGGCGGCCATCCCGTCGATATCGAGGGGATCGCGGCGATCCTGCCGCCC
GGCGTCCTGCTGATCGAGGACGCCGCCCATGCCATGGGCGGGGCCTATCTGGATGGCCGGCCGGTCGGATCGGCGGGCAA
TCCCACCTGCTACAGCTTTTACGCCAATAAGAATCTCTCGACCGGCGAGGGCGGGCTGCTGGCGGCGCCGACGGCCGAGA
TGGCCGACAGGGCCCGGCGGTTGCGGCTGCATGGCCTGGGGGCCGATAGCTGGAAACGCTATATCGATCCGCGCGCCAGC
ATCGGGCTGACCCCTTCGGAGGTCGGCTTCAAGATGAACTACACCGATCTGCAGGCCGCCATCGGCCGGGTTCAGTTGTC
GCGGCTGGACGCCATGCAGGCCCGCCGCCGCGAGATCTGCGCGCGCTATCGCCAAAGGCTGGGCGGGGCCGGGCTCGCTC
TGGGCTTCCAGGCGATGATCGAGGATCCGCGCCATGCCCGCCACCTTCTGGTGGTGCGTTTGCCGGTGGGGGAAGGCCAC
GCCCGGCGCGACGATGTTTTCCTTGGCCTCAAAAAGCAGGGAATCGGCGTCGCCATCCATTACACGCCCTTGCACCATAT
GGCCGTCTATCGGGATTACGCGGCGCGGCCGCTGCCGGTGACCGATCGCCTGAGCGACAGCATCCTCAGCCTTCCCTTGA
GCGCCTGCCTGAGCGATGAGGATGTCGAGCGGGTCTGCGAGCGGCTGATCGACGCGGTGGCGCCGTCATGA

Upstream 100 bases:

>100_bases
TATCCTTCCCGCTACACTCTCCCTGCCGTTGTCTGCGCTTCCCGGAGCGATAGGAGCGGAGTCCCGATAGAAATCGGGGT
TTGGTCAGGGAGACCGTCTG

Downstream 100 bases:

>100_bases
CGCCGCCTTGCGCGGCGCCGCGCCCGGGGGGCAGGCCGCTGACCCGGGGGGCGGCGATCTTGATCTTTCCCTTTGGGAAT
TCGGTCAGTCTTGATCTTTA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MGISEFKPLSPPAVVDAPIAFGRPSLGAAEIEAVAKVLASGWIGMGEQTLAFERDLGARIGCPHTVLLNSCTSALFLSLH
MHAIGAGDEVVLPSLNWFSAANASLWLGARPAFCDVDEETLCVTPETVAAALTPRTRAVVVVHMGGHPVDIEGIAAILPP
GVLLIEDAAHAMGGAYLDGRPVGSAGNPTCYSFYANKNLSTGEGGLLAAPTAEMADRARRLRLHGLGADSWKRYIDPRAS
IGLTPSEVGFKMNYTDLQAAIGRVQLSRLDAMQARRREICARYRQRLGGAGLALGFQAMIEDPRHARHLLVVRLPVGEGH
ARRDDVFLGLKKQGIGVAIHYTPLHHMAVYRDYAARPLPVTDRLSDSILSLPLSACLSDEDVERVCERLIDAVAPS

Sequences:

>Translated_396_residues
MGISEFKPLSPPAVVDAPIAFGRPSLGAAEIEAVAKVLASGWIGMGEQTLAFERDLGARIGCPHTVLLNSCTSALFLSLH
MHAIGAGDEVVLPSLNWFSAANASLWLGARPAFCDVDEETLCVTPETVAAALTPRTRAVVVVHMGGHPVDIEGIAAILPP
GVLLIEDAAHAMGGAYLDGRPVGSAGNPTCYSFYANKNLSTGEGGLLAAPTAEMADRARRLRLHGLGADSWKRYIDPRAS
IGLTPSEVGFKMNYTDLQAAIGRVQLSRLDAMQARRREICARYRQRLGGAGLALGFQAMIEDPRHARHLLVVRLPVGEGH
ARRDDVFLGLKKQGIGVAIHYTPLHHMAVYRDYAARPLPVTDRLSDSILSLPLSACLSDEDVERVCERLIDAVAPS
>Mature_395_residues
GISEFKPLSPPAVVDAPIAFGRPSLGAAEIEAVAKVLASGWIGMGEQTLAFERDLGARIGCPHTVLLNSCTSALFLSLHM
HAIGAGDEVVLPSLNWFSAANASLWLGARPAFCDVDEETLCVTPETVAAALTPRTRAVVVVHMGGHPVDIEGIAAILPPG
VLLIEDAAHAMGGAYLDGRPVGSAGNPTCYSFYANKNLSTGEGGLLAAPTAEMADRARRLRLHGLGADSWKRYIDPRASI
GLTPSEVGFKMNYTDLQAAIGRVQLSRLDAMQARRREICARYRQRLGGAGLALGFQAMIEDPRHARHLLVVRLPVGEGHA
RRDDVFLGLKKQGIGVAIHYTPLHHMAVYRDYAARPLPVTDRLSDSILSLPLSACLSDEDVERVCERLIDAVAPS

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=377, Percent_Identity=39.7877984084881, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI2367285, Length=389, Percent_Identity=27.7634961439589, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42299; Mature: 42168

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISEFKPLSPPAVVDAPIAFGRPSLGAAEIEAVAKVLASGWIGMGEQTLAFERDLGARI
CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
GCPHTVLLNSCTSALFLSLHMHAIGAGDEVVLPSLNWFSAANASLWLGARPAFCDVDEET
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCE
LCVTPETVAAALTPRTRAVVVVHMGGHPVDIEGIAAILPPGVLLIEDAAHAMGGAYLDGR
EEECCHHHHHHCCCCCEEEEEEEECCCEECCCCHHHHCCCCEEEEECHHHHHCCCEECCC
PVGSAGNPTCYSFYANKNLSTGEGGLLAAPTAEMADRARRLRLHGLGADSWKRYIDPRAS
CCCCCCCCEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHEEECCCHHHHHHHCCCCCC
IGLTPSEVGFKMNYTDLQAAIGRVQLSRLDAMQARRREICARYRQRLGGAGLALGFQAMI
CCCCHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
EDPRHARHLLVVRLPVGEGHARRDDVFLGLKKQGIGVAIHYTPLHHMAVYRDYAARPLPV
CCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCC
TDRLSDSILSLPLSACLSDEDVERVCERLIDAVAPS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GISEFKPLSPPAVVDAPIAFGRPSLGAAEIEAVAKVLASGWIGMGEQTLAFERDLGARI
CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
GCPHTVLLNSCTSALFLSLHMHAIGAGDEVVLPSLNWFSAANASLWLGARPAFCDVDEET
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCE
LCVTPETVAAALTPRTRAVVVVHMGGHPVDIEGIAAILPPGVLLIEDAAHAMGGAYLDGR
EEECCHHHHHHCCCCCEEEEEEEECCCEECCCCHHHHCCCCEEEEECHHHHHCCCEECCC
PVGSAGNPTCYSFYANKNLSTGEGGLLAAPTAEMADRARRLRLHGLGADSWKRYIDPRAS
CCCCCCCCEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHEEECCCHHHHHHHCCCCCC
IGLTPSEVGFKMNYTDLQAAIGRVQLSRLDAMQARRREICARYRQRLGGAGLALGFQAMI
CCCCHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
EDPRHARHLLVVRLPVGEGHARRDDVFLGLKKQGIGVAIHYTPLHHMAVYRDYAARPLPV
CCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCC
TDRLSDSILSLPLSACLSDEDVERVCERLIDAVAPS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]