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The map label for this gene is ydcN [H]

Identifier: 83593946

GI number: 83593946

Start: 3042919

End: 3043665

Strand: Reverse

Name: ydcN [H]

Synonym: Rru_A2614

Alternate gene names: 83593946

Gene position: 3043665-3042919 (Counterclockwise)

Preceding gene: 83593947

Following gene: 83593945

Centisome position: 69.92

GC content: 67.87

Gene sequence:

>747_bases
ATGACCGACGAAACGGGCCGCCTTGTCCGCGAGCGAGACGAGGACGCCCCGTCCTCGCCGCAGGCCGCCGTCCTTGCCCT
CCCTGACCGGGACGCCGCCCCGTTCTTCAGGGAAGCGGGCAGGCCCTCGGCGACGATCCCGTCCTTCGAGCCGCCGACCG
CCGCAGACCTTGGCCGATCGGCCGAGGATCTGATGCCGGTGGTCGGCGAGAATCTGCGCCGCCTGCGCACCGGGCGCGGA
TTATCGCTCGACCGGCTGGCCAAGCTGTCGGGGGTCAGCCGCGCCATGCTGGGTCAGATCGAACTGGGGCGCAGCGCGCC
GACGATCACCGTGCTTTGGAAGATCGCCCGGGCGCTTGATGTGCCGTTCTCGGCCTTCGTCGCCGCGCCGGCGCTGTCGA
AGGCCGTCGTGCTGCGGCGTTCGGAAGCCAGTTGGCTGACCTCGACCGATGGGCGGTTTTCCTCGCGCGCGCTGTTTCCC
TTCGATGCGCCGCGCCGCGTCGAATTCTATGAGGTGGTTTTATCGGGGCATTCCATCGCCCAATCCCACCCCCATCCCGC
CGGTACGGTCGAGACGCTGACGGTGGCGCGCGGCGTGCTCGAGGTGGATAGCGGCCCGCGCATCCATCGGCTGGACCCCG
GCGACGCCCTGCAGTTCGAAGCCGATATCGATCACGCCTATCGCAATCCCGGCGGTGATGACACGGTCTTCTATCTGGTC
ATGACTTATGTGGAAACCGTTGGCTGA

Upstream 100 bases:

>100_bases
TGTCGCGCCCGGCGACGATGGCGGTGGCGATGCCGATGCCGATGATGCTGTGGTGTCCGGTTTGGGTGATGGTGGCGATG
CCCGCCGCGCGGTGAGGACG

Downstream 100 bases:

>100_bases
CCCCGGCGACGGGGGCGGATTTCCTGAAAAGGCTGGCTTGCGTCCGCATACGCAGTTTTTCGGTTGCGCAAGCGGATCGA
TAAAACTTCATTCGTAGGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFEPPTAADLGRSAEDLMPVVGENLRRLRTGRG
LSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVPFSAFVAAPALSKAVVLRRSEASWLTSTDGRFSSRALFP
FDAPRRVEFYEVVLSGHSIAQSHPHPAGTVETLTVARGVLEVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLV
MTYVETVG

Sequences:

>Translated_248_residues
MTDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFEPPTAADLGRSAEDLMPVVGENLRRLRTGRG
LSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVPFSAFVAAPALSKAVVLRRSEASWLTSTDGRFSSRALFP
FDAPRRVEFYEVVLSGHSIAQSHPHPAGTVETLTVARGVLEVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLV
MTYVETVG
>Mature_247_residues
TDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFEPPTAADLGRSAEDLMPVVGENLRRLRTGRGL
SLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVPFSAFVAAPALSKAVVLRRSEASWLTSTDGRFSSRALFPF
DAPRRVEFYEVVLSGHSIAQSHPHPAGTVETLTVARGVLEVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLVM
TYVETVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=184, Percent_Identity=38.0434782608696, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 26877; Mature: 26745

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFEPPTAADLGRS
CCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCC
AEDLMPVVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
VPFSAFVAAPALSKAVVLRRSEASWLTSTDGRFSSRALFPFDAPRRVEFYEVVLSGHSIA
CCHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCEECCCCCCCCHHHHHHHHCCCHHH
QSHPHPAGTVETLTVARGVLEVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLV
HCCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCCEEEECCCHHHHCCCCCCCHHHHHH
MTYVETVG
HHHHHHCC
>Mature Secondary Structure 
TDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFEPPTAADLGRS
CCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCC
AEDLMPVVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALD
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
VPFSAFVAAPALSKAVVLRRSEASWLTSTDGRFSSRALFPFDAPRRVEFYEVVLSGHSIA
CCHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCEECCCCCCCCHHHHHHHHCCCHHH
QSHPHPAGTVETLTVARGVLEVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLV
HCCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCCEEEECCCHHHHCCCCCCCHHHHHH
MTYVETVG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]