| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is bphB [H]
Identifier: 83593570
GI number: 83593570
Start: 2593850
End: 2596447
Strand: Reverse
Name: bphB [H]
Synonym: Rru_A2235
Alternate gene names: 83593570
Gene position: 2596447-2593850 (Counterclockwise)
Preceding gene: 83593572
Following gene: 83593569
Centisome position: 59.65
GC content: 65.59
Gene sequence:
>2598_bases ATGTGTCCGTGCGGACTGGGGGCGGCCATGGACACAGTGCATTCCACCTGCGACCAGGAACCTATCCACGTCCCCGGGCT GGTGCAGCCGCACGGGTTTCTTGTCGTGCTCGATTCGAAAAGCGGCCGCATCGCCCAGGTTACGCCGGGCATCGAAGCGG TGGCCGGCGTGGTCGCCCAGCGCCTTATCGGCGAGCCGTTGGAACGGGTGCTTGATCCCCGGTCGGCCCAACGCTGTCGC CACCGTATCGCCCGCCCGGAATATCCCCATCTGATTGATCCCTTCCCGGTCAGGGCCCCGGGCGGACAGTCGTTCTCCGC CGTCGCCCATGCCACCGATCAGGCGGACTTGGTCGAATTGTGGTCCGATGATCAGGAGACCACCGTTGAAGGGGTCTTCG GCCGGCTGCCTTTCGCCATCGGTCACGCCTCGCGGGCGGCGAGCATCGAGGATCTATGCGGGCGCGCCGCCGCGACGGTG GCCGATCTCACCGGATACGAGCGGGTGATGGTCTATCGCTTCGCCGAGAACTGGGAAGGCGAAGTGATCGCCGAAACCCT GAACGGCCCGGTGGAAAGCTATAAGGGCCAGCGCTTTCCCGCCAGCGACATCCCGGCCCAGGCCCGCGCCCTTTACAGCC GCAACCTTCTGCGCTCCATTCCCGATGTTCACTATCGCCCGCTGCCCCTGGTCGGTCGGTCGCCCGATGGCCGCGAGCTT GATATGACGTTTTGTAATTTGCGCAGCGTCAGCCCGGTTCATTTGGAATATCTGCGCAATATGGGCGTGGCCGCCAGTTT CTCGGTGTCCCTGGTGGTGGATGGCCGGCTTTGGGGGCTTGTCGCCTGCCATGACCGGGTGCCGCGACGCCTGTCGTTGG CGACGATGGGCGCCTGTCAGGTTTATGCCGAAACCATCGCCCAGCAGGTTCTGCGCCTGGATAATACCCGGCGTAGCCGC CATCGTTCGCGGACGGGCGATCTGATCGATGACATTTCGGTTTTGCTGGGCAGCGGCCGCAGCTTGGCCGAGGCTTTGGA CTACACCCTGGACGATACCCTGGCGCTGTTTGGCGCCAGTCGGGCGGTGATCAGCCTCGACGGGCGGCAATGGACCGCCG AGGGACCGCTGGAAGGGGCGCCGATCCAGGTGCCGCCCCATCAGCGCCTGTTGCTGAGCGAGCGTCTGGGCGGGCGCCTC CGTCTTCCCGCCGAACTGGCCGGGTCTTTCGTCGGCGGCGTTCTTCTGCCGCTGTCCGACCAGCCCGACCGCGATTTCCT GTTGCTTGGTCGCCCGGAAACCCTGCGCAGCATCGAATGGGCCGGCCGGCCGGAAAAGCAGCCCGAGATCACCCCCGAGG GGGGCTTGAAGATCCATCCGCGCACCTCGTTCTCGTTATGGCGCGAAGAGGTCCGGGGGCGGAGCGTCGCCTTCGATCCC CTGGATCGGGAAACCGCCGAAACGCTCAGTCTGTTCCTGGCCGAGCGGTTGGCCAAGCAACGTCGCCAGCAGGCGGTGGT AGCGCTGGAGGAAACCCGCCAGCGCCTGCGCGATCTGGCCGAATGCTCGTCGGATTGGCTTTGGGAAACCACCGGTGACG GCACCTTGGCGCTGGTCTCCGATCGCATCAATGGCCTGGGCGATCTGCGGCCCGAGGAATTGGTGGGCCGCAAGCTCGTC GATCTTGTCGGCGGGGGGGATAGTGGCGGCGCGCCGGGGGTGGATGCCGATGAGATCGCCAGCGCCTTTGACGAGGGGCG GGCCTTTCACGGGCTGACGGTGTCCCTGGCCTTGCTTGGACGTGGCCAGTGGTGGGTTCGGCTGTCGGGCGTGCCGCAAT ATGACGGCCGGGGCCAGCTTTTGGGCTTTCGCGGCACCGGAACGGATGTCACGCCGTTCAAGCGCCTGCAGGAGGAGCGC GTCCGCACCCAAAGGCTGGAGGCCCTGGGGCGGTTGGCCGGCGGCATCGCCCATGAGATCGGCAATGTTTTGCAGCCGGT GCTGACCATGGCCCATTACGCGTCGAAACGCCTGGACGACCGGGACTTTCTGGAAGCGGCGCTGGCCGATATATGCGAAG GTGGGGCGCGGGCGAAGGATATCGTGCGCTCGGTTCTGACCTTCGCCCGTCAAACGCCCGCCGAACGGCGGCCTCTGGTT CTCGCCCCGGCTTTGGCCCGATCGGTGGCCTTCGCCGCCAAGGGCCATCCCGGGCTGGAGATCATCACCGATATCCCCGA TACGGCGGGCGAGATCGCCGCCAATAGCACCGAGCTGTCACAGATCGTGCTTAATCTGGTCGGCAATGCCGCCGACGCCA TGGGCGGGCGGGGCCGGGTGTTCGTGTCTTTGGCCGAAGCCCCGGATCTGGGGCGAATGGTGATCACCATCCGCGACGAG GGGCCGGGGATGACGTTGCAAACCCAGGCCCGGGTGTTCGAACCATTTTTTACGACCAAGCCGGAAGGCAGTGGCACCGG AATGGGATTGGCGGTGGTCCATGGTCTGGTCGAGGCCTGGGGGGGTACGATCGGGCTTGAAAGCGCTCCGGGATCGGGTA CAAAATTCGTAATATCCTTCCCCATTAACAATCCCTGA
Upstream 100 bases:
>100_bases AGCGATGGGATTCCCCGTGAATCATGGAAATCGGGGAACAAATCGCGAGGCGGGGACGAACCCGGTCAGATCTGCGTGGC GTTTTCAGGCGGGGACGGGG
Downstream 100 bases:
>100_bases AAGCGGAAGAGGAATCATGCCGAACGGGAAGACAGTCCTGATTGTCGACGATGATACGAATGTCAGGAAAGCCATCCGTC TGGGGGTGGAGGAATTGGGT
Product: multi-sensor Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 865; Mature: 865
Protein sequence:
>865_residues MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPGIEAVAGVVAQRLIGEPLERVLDPRSAQRCR HRIARPEYPHLIDPFPVRAPGGQSFSAVAHATDQADLVELWSDDQETTVEGVFGRLPFAIGHASRAASIEDLCGRAAATV ADLTGYERVMVYRFAENWEGEVIAETLNGPVESYKGQRFPASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGREL DMTFCNLRSVSPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQVYAETIAQQVLRLDNTRRSR HRSRTGDLIDDISVLLGSGRSLAEALDYTLDDTLALFGASRAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRL RLPAELAGSFVGGVLLPLSDQPDRDFLLLGRPETLRSIEWAGRPEKQPEITPEGGLKIHPRTSFSLWREEVRGRSVAFDP LDRETAETLSLFLAERLAKQRRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVSDRINGLGDLRPEELVGRKLV DLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLGRGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEER VRTQRLEALGRLAGGIAHEIGNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKDIVRSVLTFARQTPAERRPLV LAPALARSVAFAAKGHPGLEIITDIPDTAGEIAANSTELSQIVLNLVGNAADAMGGRGRVFVSLAEAPDLGRMVITIRDE GPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAWGGTIGLESAPGSGTKFVISFPINNP
Sequences:
>Translated_865_residues MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPGIEAVAGVVAQRLIGEPLERVLDPRSAQRCR HRIARPEYPHLIDPFPVRAPGGQSFSAVAHATDQADLVELWSDDQETTVEGVFGRLPFAIGHASRAASIEDLCGRAAATV ADLTGYERVMVYRFAENWEGEVIAETLNGPVESYKGQRFPASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGREL DMTFCNLRSVSPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQVYAETIAQQVLRLDNTRRSR HRSRTGDLIDDISVLLGSGRSLAEALDYTLDDTLALFGASRAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRL RLPAELAGSFVGGVLLPLSDQPDRDFLLLGRPETLRSIEWAGRPEKQPEITPEGGLKIHPRTSFSLWREEVRGRSVAFDP LDRETAETLSLFLAERLAKQRRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVSDRINGLGDLRPEELVGRKLV DLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLGRGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEER VRTQRLEALGRLAGGIAHEIGNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKDIVRSVLTFARQTPAERRPLV LAPALARSVAFAAKGHPGLEIITDIPDTAGEIAANSTELSQIVLNLVGNAADAMGGRGRVFVSLAEAPDLGRMVITIRDE GPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAWGGTIGLESAPGSGTKFVISFPINNP >Mature_865_residues MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPGIEAVAGVVAQRLIGEPLERVLDPRSAQRCR HRIARPEYPHLIDPFPVRAPGGQSFSAVAHATDQADLVELWSDDQETTVEGVFGRLPFAIGHASRAASIEDLCGRAAATV ADLTGYERVMVYRFAENWEGEVIAETLNGPVESYKGQRFPASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGREL DMTFCNLRSVSPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQVYAETIAQQVLRLDNTRRSR HRSRTGDLIDDISVLLGSGRSLAEALDYTLDDTLALFGASRAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRL RLPAELAGSFVGGVLLPLSDQPDRDFLLLGRPETLRSIEWAGRPEKQPEITPEGGLKIHPRTSFSLWREEVRGRSVAFDP LDRETAETLSLFLAERLAKQRRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVSDRINGLGDLRPEELVGRKLV DLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLGRGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEER VRTQRLEALGRLAGGIAHEIGNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKDIVRSVLTFARQTPAERRPLV LAPALARSVAFAAKGHPGLEIITDIPDTAGEIAANSTELSQIVLNLVGNAADAMGGRGRVFVSLAEAPDLGRMVITIRDE GPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAWGGTIGLESAPGSGTKFVISFPINNP
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=366, Percent_Identity=26.2295081967213, Blast_Score=115, Evalue=2e-26, Organism=Escherichia coli, GI1790436, Length=230, Percent_Identity=33.4782608695652, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1790300, Length=302, Percent_Identity=27.4834437086093, Blast_Score=77, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93592; Mature: 93592
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPGIEAVAGVVAQ CCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCHHHHHHHHHH RLIGEPLERVLDPRSAQRCRHRIARPEYPHLIDPFPVRAPGGQSFSAVAHATDQADLVEL HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH WSDDQETTVEGVFGRLPFAIGHASRAASIEDLCGRAAATVADLTGYERVMVYRFAENWEG HCCCCHHHHHHHHHHCCHHHCCCHHCCCHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCC EVIAETLNGPVESYKGQRFPASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGREL CEEHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE DMTFCNLRSVSPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQ EEEEECCCCCCHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEHHHCCCCHHHHHHHHHHH VYAETIAQQVLRLDNTRRSRHRSRTGDLIDDISVLLGSGRSLAEALDYTLDDTLALFGAS HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCC RAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRLRLPAELAGSFVGGVLLPLSD CEEEEECCCEEECCCCCCCCCEECCCHHHHHHHHHCCCEEECCHHHHHHHHCCEEEECCC QPDRDFLLLGRPETLRSIEWAGRPEKQPEITPEGGLKIHPRTSFSLWREEVRGRSVAFDP CCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEECC LDRETAETLSLFLAERLAKQRRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE DRINGLGDLRPEELVGRKLVDLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLG HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE RGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEERVRTQRLEALGRLAGGIAHEI CCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKDIVRSVLTFARQTPAERRPLV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE LAPALARSVAFAAKGHPGLEIITDIPDTAGEIAANSTELSQIVLNLVGNAADAMGGRGRV EEHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCCHHHHCCCCCEE FVSLAEAPDLGRMVITIRDEGPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAW EEEECCCCCCCEEEEEEECCCCCCEEEHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHC GGTIGLESAPGSGTKFVISFPINNP CCCEECCCCCCCCCEEEEECCCCCC >Mature Secondary Structure MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPGIEAVAGVVAQ CCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCHHHHHHHHHH RLIGEPLERVLDPRSAQRCRHRIARPEYPHLIDPFPVRAPGGQSFSAVAHATDQADLVEL HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH WSDDQETTVEGVFGRLPFAIGHASRAASIEDLCGRAAATVADLTGYERVMVYRFAENWEG HCCCCHHHHHHHHHHCCHHHCCCHHCCCHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCC EVIAETLNGPVESYKGQRFPASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGREL CEEHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE DMTFCNLRSVSPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQ EEEEECCCCCCHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEHHHCCCCHHHHHHHHHHH VYAETIAQQVLRLDNTRRSRHRSRTGDLIDDISVLLGSGRSLAEALDYTLDDTLALFGAS HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCC RAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRLRLPAELAGSFVGGVLLPLSD CEEEEECCCEEECCCCCCCCCEECCCHHHHHHHHHCCCEEECCHHHHHHHHCCEEEECCC QPDRDFLLLGRPETLRSIEWAGRPEKQPEITPEGGLKIHPRTSFSLWREEVRGRSVAFDP CCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEECC LDRETAETLSLFLAERLAKQRRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE DRINGLGDLRPEELVGRKLVDLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLG HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE RGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEERVRTQRLEALGRLAGGIAHEI CCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKDIVRSVLTFARQTPAERRPLV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE LAPALARSVAFAAKGHPGLEIITDIPDTAGEIAANSTELSQIVLNLVGNAADAMGGRGRV EEHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCCHHHHCCCCCEE FVSLAEAPDLGRMVITIRDEGPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAW EEEECCCCCCCEEEEEEECCCCCCEEEHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHC GGTIGLESAPGSGTKFVISFPINNP CCCEECCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]