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The map label for this gene is yfdE [H]

Identifier: 83593341

GI number: 83593341

Start: 2317343

End: 2318566

Strand: Direct

Name: yfdE [H]

Synonym: Rru_A2006

Alternate gene names: 83593341

Gene position: 2317343-2318566 (Clockwise)

Preceding gene: 83593340

Following gene: 83593343

Centisome position: 53.24

GC content: 69.2

Gene sequence:

>1224_bases
ATGGCCGCAGCCCTTGATGGCATTCGCGTTCTTGATTTGTCCCGCGTGCTGGCCGGCCCCTGGGCCAGTCAGGCCCTGGC
CGACCTGGGGGCCGAGGTCATCAAGATCGAGCGCCCCGGCGCCGGCGACGACACCCGGTCGTGGGGGCCGCCCTTCCTCA
AGGACGAGGACGGGCGCGAGACCACCGACGCCGCCTATTTCCTGGCGGCCAATCGCGGCAAGAAATCCCTGACCGTCGAT
ATCACCAAAGCCGAGGGCCAGGATTTGGTCCGCGCCCTGGCGGCGCGCAGCCATGTGGTGATCGAGAACTTCAAGCTGGG
CGGTCTGGCGAAATACGGCCTGGACTGGCCCAGCCTGCGGGCGGTCAATCCGGCCCTGGTCTATTGCTCGATCACCGGCT
TTGGCCAGACCGGCCCCTATGCGCCACGGGCGGGCTATGACGCGATGATCCAGGCGATGTCGGGGCTGATGAGCGTGACC
GGCGAACCCGATGGCGTGGCCGGCGGCGGACCGATGAAGGTGGGGGTGGCGGTGACCGATATCCTCACCGGCCTCTATGC
GGCCTTTGGCATCCTCGCCGCCCTGCGCCATGCCGAAGCCACCGGCGAGGGCCAGCACATCGACCTCGCCCTGATGGATA
CGGCGGTCGCCTGCATGGCCAATCAGGCGGCCAACGCCCTGGTTGGCGAGCGCGTGCCCGGCCGCCTGGGCACGGCGCAC
CCCAATATCGTGCCCTATCAGGCCTTCGCCACCCAGGACGGCCATCTGATGCTGGCGGTGGGCAACGACGGCCAGTTCGC
CCGCCTGTGCGCGATCGGCCAGCGCCCGGACCTGCCCCTAGATCCGCGCTTTGCCCGCAACCGCGACCGCGTGGCCCATC
GCGCCGCCCTGCTGGCCGAGATCATCCCGATGATGGCGAGCCGCTCGACCGATGCCTGGATCGCCGCCCTGGAAAGCGCC
GGGGTGCCTTGCGGCCCGATCAATACCCTGGATCGGGTCTTCGCCGATCCCCAGGTCATCGCCCGGGGCCTGCGCGTCGA
TGGCACCCACGCCGAGGCCGGCACGGTGCCGATGGTGCGCAATCCCTTGCTGCTATCAGCCACCCCGCCCACCCACACCG
CCGGCCCGCCGACGCTGGGCCAGCATACTGATGGGGTGCTCAGCGACGTTCTGGGGCTGACCGCCGAGGACATCACCACC
CTACGCCAAAAGGCGATCGTTTAG

Upstream 100 bases:

>100_bases
GGAAAGCGTCAATACCTACGAGGGCACCCACGATGTCCACGCCCTGATCCTCGGCCGCGCCCAAACCGGGTTGCAGGCCT
TCTTCTAAGGCATCCCAGCC

Downstream 100 bases:

>100_bases
CGTGTGGCGATAGGCTTCTCGCCCCACATCGCCACGCCCAGAACGCGCCGCATATCGCGCAATGTCACCATCGGCGCCCC
CCCTGTTCAAGACGGATAGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MAAALDGIRVLDLSRVLAGPWASQALADLGAEVIKIERPGAGDDTRSWGPPFLKDEDGRETTDAAYFLAANRGKKSLTVD
ITKAEGQDLVRALAARSHVVIENFKLGGLAKYGLDWPSLRAVNPALVYCSITGFGQTGPYAPRAGYDAMIQAMSGLMSVT
GEPDGVAGGGPMKVGVAVTDILTGLYAAFGILAALRHAEATGEGQHIDLALMDTAVACMANQAANALVGERVPGRLGTAH
PNIVPYQAFATQDGHLMLAVGNDGQFARLCAIGQRPDLPLDPRFARNRDRVAHRAALLAEIIPMMASRSTDAWIAALESA
GVPCGPINTLDRVFADPQVIARGLRVDGTHAEAGTVPMVRNPLLLSATPPTHTAGPPTLGQHTDGVLSDVLGLTAEDITT
LRQKAIV

Sequences:

>Translated_407_residues
MAAALDGIRVLDLSRVLAGPWASQALADLGAEVIKIERPGAGDDTRSWGPPFLKDEDGRETTDAAYFLAANRGKKSLTVD
ITKAEGQDLVRALAARSHVVIENFKLGGLAKYGLDWPSLRAVNPALVYCSITGFGQTGPYAPRAGYDAMIQAMSGLMSVT
GEPDGVAGGGPMKVGVAVTDILTGLYAAFGILAALRHAEATGEGQHIDLALMDTAVACMANQAANALVGERVPGRLGTAH
PNIVPYQAFATQDGHLMLAVGNDGQFARLCAIGQRPDLPLDPRFARNRDRVAHRAALLAEIIPMMASRSTDAWIAALESA
GVPCGPINTLDRVFADPQVIARGLRVDGTHAEAGTVPMVRNPLLLSATPPTHTAGPPTLGQHTDGVLSDVLGLTAEDITT
LRQKAIV
>Mature_406_residues
AAALDGIRVLDLSRVLAGPWASQALADLGAEVIKIERPGAGDDTRSWGPPFLKDEDGRETTDAAYFLAANRGKKSLTVDI
TKAEGQDLVRALAARSHVVIENFKLGGLAKYGLDWPSLRAVNPALVYCSITGFGQTGPYAPRAGYDAMIQAMSGLMSVTG
EPDGVAGGGPMKVGVAVTDILTGLYAAFGILAALRHAEATGEGQHIDLALMDTAVACMANQAANALVGERVPGRLGTAHP
NIVPYQAFATQDGHLMLAVGNDGQFARLCAIGQRPDLPLDPRFARNRDRVAHRAALLAEIIPMMASRSTDAWIAALESAG
VPCGPINTLDRVFADPQVIARGLRVDGTHAEAGTVPMVRNPLLLSATPPTHTAGPPTLGQHTDGVLSDVLGLTAEDITTL
RQKAIV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=387, Percent_Identity=44.1860465116279, Blast_Score=342, Evalue=5e-94,
Organism=Homo sapiens, GI300863124, Length=413, Percent_Identity=41.4043583535109, Blast_Score=327, Evalue=1e-89,
Organism=Homo sapiens, GI13376042, Length=413, Percent_Identity=38.7409200968523, Blast_Score=288, Evalue=5e-78,
Organism=Homo sapiens, GI300863126, Length=387, Percent_Identity=39.0180878552972, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=26.6503667481663, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=26.6503667481663, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI266458393, Length=272, Percent_Identity=30.8823529411765, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI266458397, Length=272, Percent_Identity=30.8823529411765, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=34.8684210526316, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=34.8684210526316, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=34.4647519582245, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=29.3427230046948, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1786222, Length=429, Percent_Identity=24.4755244755245, Blast_Score=82, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=345, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=215, Percent_Identity=28.8372093023256, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=45.6575682382134, Blast_Score=347, Evalue=7e-96,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=27.3775216138329, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42566; Mature: 42435

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAALDGIRVLDLSRVLAGPWASQALADLGAEVIKIERPGAGDDTRSWGPPFLKDEDGRE
CCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
TTDAAYFLAANRGKKSLTVDITKAEGQDLVRALAARSHVVIENFKLGGLAKYGLDWPSLR
CCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCHHCCCCCCCCC
AVNPALVYCSITGFGQTGPYAPRAGYDAMIQAMSGLMSVTGEPDGVAGGGPMKVGVAVTD
CCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHH
ILTGLYAAFGILAALRHAEATGEGQHIDLALMDTAVACMANQAANALVGERVPGRLGTAH
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PNIVPYQAFATQDGHLMLAVGNDGQFARLCAIGQRPDLPLDPRFARNRDRVAHRAALLAE
CCCEEEHHEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHHH
IIPMMASRSTDAWIAALESAGVPCGPINTLDRVFADPQVIARGLRVDGTHAEAGTVPMVR
HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEC
NPLLLSATPPTHTAGPPTLGQHTDGVLSDVLGLTAEDITTLRQKAIV
CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AAALDGIRVLDLSRVLAGPWASQALADLGAEVIKIERPGAGDDTRSWGPPFLKDEDGRE
CCCCCCCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
TTDAAYFLAANRGKKSLTVDITKAEGQDLVRALAARSHVVIENFKLGGLAKYGLDWPSLR
CCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCHHCCCCCCCCC
AVNPALVYCSITGFGQTGPYAPRAGYDAMIQAMSGLMSVTGEPDGVAGGGPMKVGVAVTD
CCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHH
ILTGLYAAFGILAALRHAEATGEGQHIDLALMDTAVACMANQAANALVGERVPGRLGTAH
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PNIVPYQAFATQDGHLMLAVGNDGQFARLCAIGQRPDLPLDPRFARNRDRVAHRAALLAE
CCCEEEHHEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHHH
IIPMMASRSTDAWIAALESAGVPCGPINTLDRVFADPQVIARGLRVDGTHAEAGTVPMVR
HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEC
NPLLLSATPPTHTAGPPTLGQHTDGVLSDVLGLTAEDITTLRQKAIV
CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]