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The map label for this gene is dppB [H]

Identifier: 83593253

GI number: 83593253

Start: 2222931

End: 2223932

Strand: Direct

Name: dppB [H]

Synonym: Rru_A1918

Alternate gene names: 83593253

Gene position: 2222931-2223932 (Clockwise)

Preceding gene: 83593252

Following gene: 83593254

Centisome position: 51.07

GC content: 62.08

Gene sequence:

>1002_bases
ATGAAAGCGGTCTTGCGGACTCTTCTCGCCACGGCAACCACCCTGTTCGGGCTGTTGTTCGTGACCTTCCTCATCAGCCG
CATGCTGCCGGCCGATCCGGTTCTGGCCGTCGTCGGCGACCACGCCTCGCAGGCGTTGGTCGATCGCACCCGGATCGAGC
TTGGCCTCGACAAACCGCTGCTGGTGCAATTCGGGCTTTACATCGGCAATGTGCTGCAAGGCGACCTTGGCCAATCGGTG
CGAACGGGCGAACCGATCGCCTCGGAACTCGCCCGGGTCTTTCCCGCCACGCTGGAACTGGCCACGCTCGGCACGCTGAT
TGGCGTGCTGGCCGGGGTGCCGCTGGGTATTCTCGCCGCCCTGCGCAAGGATACGCTGATCGACCATCTGGTGCGCTTCA
TCGGGCTGATGGGCTATTCGTTTCCGATTTTCTGGCTGGGGCTGATGGGGCTTTTGGTGTTCTACGCGACGCTCGGCGTC
TTGCCCGGCCCGGGACGCCTTGATTTCGGCTATGAGGATTTCGTCACCCCGATCACCGGGTTGATGACCATCGATACCCT
GCTGGCCGGCGATATGGACCTGTTCCGCAATGCCCTGGCCCATCTGATCTTGCCCGCCGGGCTGCTGGGCTATTACTCGC
TGGCCTATATCAGCCGCATGACGCGGTCGCTGATGCTGGGCGAATTGCGCCAGGAATACATCATCACCGCCCGGGTCAAG
GGCGTGAGCGAGACCAAGATCGTCTGGAAGCACGCCCTGGGCAACATCAAGGTGCCGCTGATCACCGTCGTCGCCCTGTC
CTATGCCGGGCTGCTCGAAGGCTCGGTGCTGACCGAAACGGTGTTTTCGTGGCGCGGCCTCGGCCTTTACATCACCGATT
CCATCTTCGGCCAGGACATGCCGGCGGTGATGGGCGGCACCATCGTGGTTGGTGTCATCTTCATCGTCATCAATATGCTG
ACCGATGTCGCCTATCGTTTCCTCGATCCAAGGTCCCGCTGA

Upstream 100 bases:

>100_bases
CCCGAAGCCTCCGGCCGGCATCCCCGGCCGGAGTTTCTTTTGTTCAGGACCGACCGATGCCACGATCGCCCCTTCCCCCC
ATCGCCTGGTCCCGGGTCGC

Downstream 100 bases:

>100_bases
TGGCCTCCTCTCCCCCCCGCGCCCCGCGCCCCGCGCGCGCCCCCTGGGTCCTCTGGCTGCTCAGCGACTCCCCCGCCTCG
CGGCTTCAGGCCCGCCTCGG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKAVLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHASQALVDRTRIELGLDKPLLVQFGLYIGNVLQGDLGQSV
RTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRKDTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGV
LPGPGRLDFGYEDFVTPITGLMTIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVK
GVSETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPAVMGGTIVVGVIFIVINML
TDVAYRFLDPRSR

Sequences:

>Translated_333_residues
MKAVLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHASQALVDRTRIELGLDKPLLVQFGLYIGNVLQGDLGQSV
RTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRKDTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGV
LPGPGRLDFGYEDFVTPITGLMTIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVK
GVSETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPAVMGGTIVVGVIFIVINML
TDVAYRFLDPRSR
>Mature_333_residues
MKAVLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHASQALVDRTRIELGLDKPLLVQFGLYIGNVLQGDLGQSV
RTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRKDTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGV
LPGPGRLDFGYEDFVTPITGLMTIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVK
GVSETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPAVMGGTIVVGVIFIVINML
TDVAYRFLDPRSR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=46.6666666666667, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=39.7014925373134, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI1787053, Length=333, Percent_Identity=34.8348348348348, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=31.547619047619, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=33.955223880597, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=26.865671641791, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=27.8571428571429, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36103; Mature: 36103

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50928 ABC_TM1 ; PS00267 TACHYKININ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]