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The map label for this gene is ddpA [H]

Identifier: 83593252

GI number: 83593252

Start: 2221272

End: 2222828

Strand: Direct

Name: ddpA [H]

Synonym: Rru_A1917

Alternate gene names: 83593252

Gene position: 2221272-2222828 (Clockwise)

Preceding gene: 83593251

Following gene: 83593253

Centisome position: 51.03

GC content: 60.18

Gene sequence:

>1557_bases
ATGAAGCAGTTCCTCAAGGCCAGCGTATTCACCCTGTCCATCGCCCTGACGCCCTTCGCCACCGTTCACGCGGCCACGCC
GAAGGATACCCTGGTGATGGCCTGGGTCTTCGACGACATCGTCACCCTCGACCCCGCCGAGATCTACGAAGTCTCGGGCT
CCGAGTTCATGGCCAATGTCTACGATCGTCTGGTCACCCTCGACGAAAAAGACCCGTCGAAGCTGCGCAATGTCATCGCC
GAAAGCTGGTCGGTCTCCGAAGACGGCAAGACCTTCACCTTCAAGATCCGCCCCAACAACACCTTCTTTTCAGGCAATCC
GGTGACGGGCGAGGACGTGGAGTTCTCGGTCGAGCGCTATGTGCTGCTTGATAAGAACCCGGCCTTCATCATGAACCAGT
TCGGCCTGACCAAGGAGAACGTCCGCGACAAGGTGCGGCTGGTCGATCCGATGACGGTGGAAATCGAGCTTGATCAGGCC
TATGCGCCGTCGTTCTTCCTGAACTGCGTCAGCTATACCACGGCGGTTGTCGACAAGAAGGAAGTGCTCTCCCACGAGGA
GAACGGCGATTTCGGCAATGGCTGGCTCAAGCGCAATTACGCCGGTTCGGGCCCCTTCTTCCTGAAGGCCTGGAAGCCCA
ATGAATCGCTGGTGCTGGAAGCCAATCCCAAGTACTTCGATGGCGCGCCGACGATCAAGCGCGTGCTGGCCAAGAACGTC
GTGGAAAGCGCCACCCAGCAGCTTCTGCTCGAAAAGGGCGATGTCGACGTGGCGCGCAATCTGACCGGCGATCAGCTCGC
CGCCGTGCGCAAGAACGCCGATATCACCATCGACGCCGAGACCAAGGCGACGCTGTGGTACATGGGCCTCAACGTGAAAA
ACCCGATCCTGGCCAAGCCCGAAGTGCGTCAGGCGATGAAGTATCTGGTCGATTACAAGGGGATGGCCGACAGCATCTTC
GCCGGCACCGGCACCATCCACCAGACCTTCGTTCCCAGCCGCCAGTTGGGCGCCCTTGATGAGACGCCGTTTTCCTTCGA
TCTCGCCAAGGCCAAGGAGCTGCTGGCCAAGGCCGGGCTGCCCGATGGCTTCTCGGTGACCATGGACACCACCAACAAGT
CCGAGACCCGCAATCTCGCCGACGCCATCCAGTCGTCGATGAGCAAGGCCGGCATCAAGATCGAACTCAAGGTCGCCGAC
AACAAGACCACCCTGACCCGCTACCGCGCCAGCGAGCATGATATCTACATCGGCCAGTGGGGCTCCGATTACTGGGATCC
CCATTCCAACACCGACGGCTATCTCAACGCGCCCTTGGCCAAGCGCAATCAGTGGGAGGTCCCGGGGCTGGTCGACAAGG
TCTTCGCCGCCCGCGACGAGAAGGACCCGGTCAAGCGCGCCCAGATGTACAAGGACCTGCAAAGCATGGCCCTTGAGGAA
AGCCCCTATGTGATTATCCTCCAGCAGGTGGAAAACGCCGCCGTTCGCAAGGAGGTCAAGGGCTTCGTCCTCGGCCCGAC
GTTCGACCTCAACCTTTATCGTCACGTCACGAAGTAA

Upstream 100 bases:

>100_bases
TGCCCAAGGGTCGGGCAAGGACGAAGGGGGCGCCACGGCCCGCCGTCGAGTCCGCCCCGCCTCGATCCCCTTGTCCACGC
CTTACGGGAGACACCCGCCG

Downstream 100 bases:

>100_bases
GACCCGAAGCCTCCGGCCGGCATCCCCGGCCGGAGTTTCTTTTGTTCAGGACCGACCGATGCCACGATCGCCCCTTCCCC
CCATCGCCTGGTCCCGGGTC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MKQFLKASVFTLSIALTPFATVHAATPKDTLVMAWVFDDIVTLDPAEIYEVSGSEFMANVYDRLVTLDEKDPSKLRNVIA
ESWSVSEDGKTFTFKIRPNNTFFSGNPVTGEDVEFSVERYVLLDKNPAFIMNQFGLTKENVRDKVRLVDPMTVEIELDQA
YAPSFFLNCVSYTTAVVDKKEVLSHEENGDFGNGWLKRNYAGSGPFFLKAWKPNESLVLEANPKYFDGAPTIKRVLAKNV
VESATQQLLLEKGDVDVARNLTGDQLAAVRKNADITIDAETKATLWYMGLNVKNPILAKPEVRQAMKYLVDYKGMADSIF
AGTGTIHQTFVPSRQLGALDETPFSFDLAKAKELLAKAGLPDGFSVTMDTTNKSETRNLADAIQSSMSKAGIKIELKVAD
NKTTLTRYRASEHDIYIGQWGSDYWDPHSNTDGYLNAPLAKRNQWEVPGLVDKVFAARDEKDPVKRAQMYKDLQSMALEE
SPYVIILQQVENAAVRKEVKGFVLGPTFDLNLYRHVTK

Sequences:

>Translated_518_residues
MKQFLKASVFTLSIALTPFATVHAATPKDTLVMAWVFDDIVTLDPAEIYEVSGSEFMANVYDRLVTLDEKDPSKLRNVIA
ESWSVSEDGKTFTFKIRPNNTFFSGNPVTGEDVEFSVERYVLLDKNPAFIMNQFGLTKENVRDKVRLVDPMTVEIELDQA
YAPSFFLNCVSYTTAVVDKKEVLSHEENGDFGNGWLKRNYAGSGPFFLKAWKPNESLVLEANPKYFDGAPTIKRVLAKNV
VESATQQLLLEKGDVDVARNLTGDQLAAVRKNADITIDAETKATLWYMGLNVKNPILAKPEVRQAMKYLVDYKGMADSIF
AGTGTIHQTFVPSRQLGALDETPFSFDLAKAKELLAKAGLPDGFSVTMDTTNKSETRNLADAIQSSMSKAGIKIELKVAD
NKTTLTRYRASEHDIYIGQWGSDYWDPHSNTDGYLNAPLAKRNQWEVPGLVDKVFAARDEKDPVKRAQMYKDLQSMALEE
SPYVIILQQVENAAVRKEVKGFVLGPTFDLNLYRHVTK
>Mature_518_residues
MKQFLKASVFTLSIALTPFATVHAATPKDTLVMAWVFDDIVTLDPAEIYEVSGSEFMANVYDRLVTLDEKDPSKLRNVIA
ESWSVSEDGKTFTFKIRPNNTFFSGNPVTGEDVEFSVERYVLLDKNPAFIMNQFGLTKENVRDKVRLVDPMTVEIELDQA
YAPSFFLNCVSYTTAVVDKKEVLSHEENGDFGNGWLKRNYAGSGPFFLKAWKPNESLVLEANPKYFDGAPTIKRVLAKNV
VESATQQLLLEKGDVDVARNLTGDQLAAVRKNADITIDAETKATLWYMGLNVKNPILAKPEVRQAMKYLVDYKGMADSIF
AGTGTIHQTFVPSRQLGALDETPFSFDLAKAKELLAKAGLPDGFSVTMDTTNKSETRNLADAIQSSMSKAGIKIELKVAD
NKTTLTRYRASEHDIYIGQWGSDYWDPHSNTDGYLNAPLAKRNQWEVPGLVDKVFAARDEKDPVKRAQMYKDLQSMALEE
SPYVIILQQVENAAVRKEVKGFVLGPTFDLNLYRHVTK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=519, Percent_Identity=31.5992292870906, Blast_Score=212, Evalue=6e-56,
Organism=Escherichia coli, GI1787052, Length=526, Percent_Identity=25.4752851711027, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789966, Length=480, Percent_Identity=25, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1787551, Length=477, Percent_Identity=23.8993710691824, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1789887, Length=516, Percent_Identity=26.3565891472868, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787495, Length=505, Percent_Identity=24.1584158415842, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081878, Length=549, Percent_Identity=24.0437158469945, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789397, Length=495, Percent_Identity=24.6464646464646, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87082063, Length=530, Percent_Identity=21.1320754716981, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57942; Mature: 57942

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFLKASVFTLSIALTPFATVHAATPKDTLVMAWVFDDIVTLDPAEIYEVSGSEFMANV
CCHHHHHHEEEEEEEECCCEEEEECCCCCCEEEEEECCCHHCCCCHHHEECCCHHHHHHH
YDRLVTLDEKDPSKLRNVIAESWSVSEDGKTFTFKIRPNNTFFSGNPVTGEDVEFSVERY
HHHHEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEE
VLLDKNPAFIMNQFGLTKENVRDKVRLVDPMTVEIELDQAYAPSFFLNCVSYTTAVVDKK
EEEECCCCEEECCCCCCHHHHHCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHCHH
EVLSHEENGDFGNGWLKRNYAGSGPFFLKAWKPNESLVLEANPKYFDGAPTIKRVLAKNV
HHHCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHH
VESATQQLLLEKGDVDVARNLTGDQLAAVRKNADITIDAETKATLWYMGLNVKNPILAKP
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCH
EVRQAMKYLVDYKGMADSIFAGTGTIHQTFVPSRQLGALDETPFSFDLAKAKELLAKAGL
HHHHHHHHHHHCCCCCCHHCCCCCCEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHCCC
PDGFSVTMDTTNKSETRNLADAIQSSMSKAGIKIELKVADNKTTLTRYRASEHDIYIGQW
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEECC
GSDYWDPHSNTDGYLNAPLAKRNQWEVPGLVDKVFAARDEKDPVKRAQMYKDLQSMALEE
CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
SPYVIILQQVENAAVRKEVKGFVLGPTFDLNLYRHVTK
CCEEEEEEHHHHHHHHHHHCCEEECCEECCHHHHCCCC
>Mature Secondary Structure
MKQFLKASVFTLSIALTPFATVHAATPKDTLVMAWVFDDIVTLDPAEIYEVSGSEFMANV
CCHHHHHHEEEEEEEECCCEEEEECCCCCCEEEEEECCCHHCCCCHHHEECCCHHHHHHH
YDRLVTLDEKDPSKLRNVIAESWSVSEDGKTFTFKIRPNNTFFSGNPVTGEDVEFSVERY
HHHHEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEE
VLLDKNPAFIMNQFGLTKENVRDKVRLVDPMTVEIELDQAYAPSFFLNCVSYTTAVVDKK
EEEECCCCEEECCCCCCHHHHHCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHCHH
EVLSHEENGDFGNGWLKRNYAGSGPFFLKAWKPNESLVLEANPKYFDGAPTIKRVLAKNV
HHHCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHH
VESATQQLLLEKGDVDVARNLTGDQLAAVRKNADITIDAETKATLWYMGLNVKNPILAKP
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCH
EVRQAMKYLVDYKGMADSIFAGTGTIHQTFVPSRQLGALDETPFSFDLAKAKELLAKAGL
HHHHHHHHHHHCCCCCCHHCCCCCCEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHCCC
PDGFSVTMDTTNKSETRNLADAIQSSMSKAGIKIELKVADNKTTLTRYRASEHDIYIGQW
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEECC
GSDYWDPHSNTDGYLNAPLAKRNQWEVPGLVDKVFAARDEKDPVKRAQMYKDLQSMALEE
CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
SPYVIILQQVENAAVRKEVKGFVLGPTFDLNLYRHVTK
CCEEEEEEHHHHHHHHHHHCCEEECCEECCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]