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The map label for this gene is rpoZ

Identifier: 83593192

GI number: 83593192

Start: 2156281

End: 2156697

Strand: Reverse

Name: rpoZ

Synonym: Rru_A1857

Alternate gene names: 83593192

Gene position: 2156697-2156281 (Counterclockwise)

Preceding gene: 83593193

Following gene: 83593191

Centisome position: 49.55

GC content: 63.07

Gene sequence:

>417_bases
ATGGCCCGCGTTACCGTCGAGGACTGCGTCCTCAAGATCCCCAATCGGTTCGAACTGGTGCTGGTCGCCGGCCAGCGGGC
GCGTGACATCTCGGCCGGATCGGCCCTGACCGTGGATCGTGACAACGATAAGAACCCGGTCGTGTCGCTGCGCGAAATCG
CCGATGGCACCGTTGATATCCCCAATCTCAAGGAAGCCGTCATCCAGGGGCTGCAAAAGCACGTCGAAATCGACGAGCCC
GAGGAAGACGATTTCGACGCCATGGGCCTCGATCGCGATCTGATGCCCGGGGTCGCCCTGGCCGAGGATGACGACACCCT
GGAAGCCGACGGCCTGACCATTCACGATGGCGCCGATTCCGATCTCGACCTGTCCGATGACGCCGGCCAGGACACCGATG
AGGCGGACGAAGACTAG

Upstream 100 bases:

>100_bases
GTTGCAAACCGCCGGCCTAGTCTCTATATATGCCGGTCCCCCGGGCAGCTTTGCGCCGCCCGGACCGTCCCCCTGACCTT
ACGCTTTCTGGAGGGTTTGC

Downstream 100 bases:

>100_bases
GGAGGGACGGGGCAGGGACGCGTGCGGAGGAGGCGGATGATGATCGGGCGCCATGACGCCATCGGTTCCGTTTCCCTTCG
TCCCCCCTTCGCCCGATCCC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDIPNLKEAVIQGLQKHVEIDEP
EEDDFDAMGLDRDLMPGVALAEDDDTLEADGLTIHDGADSDLDLSDDAGQDTDEADED

Sequences:

>Translated_138_residues
MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDIPNLKEAVIQGLQKHVEIDEP
EEDDFDAMGLDRDLMPGVALAEDDDTLEADGLTIHDGADSDLDLSDDAGQDTDEADED
>Mature_137_residues
ARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDIPNLKEAVIQGLQKHVEIDEPE
EDDFDAMGLDRDLMPGVALAEDDDTLEADGLTIHDGADSDLDLSDDAGQDTDEADED

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=60, Percent_Identity=53.3333333333333, Blast_Score=59, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_RHORT (Q2RT88)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426944.1
- STRING:   Q2RT88
- GeneID:   3835281
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1857
- NMPDR:   fig|1085.1.peg.2431
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NQDESED
- PhylomeDB:   Q2RT88
- ProtClustDB:   PRK00392
- BioCyc:   RRUB269796:RRU_A1857-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14917; Mature: 14786

Theoretical pI: Translated: 3.68; Mature: 3.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDI
CCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEHHHHCCCCCCC
PNLKEAVIQGLQKHVEIDEPEEDDFDAMGLDRDLMPGVALAEDDDTLEADGLTIHDGADS
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
DLDLSDDAGQDTDEADED
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDI
CCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEHHHHCCCCCCC
PNLKEAVIQGLQKHVEIDEPEEDDFDAMGLDRDLMPGVALAEDDDTLEADGLTIHDGADS
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
DLDLSDDAGQDTDEADED
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA