Click here to switch to the map view.

The map label for this gene is mdcC [H]

Identifier: 83592659

GI number: 83592659

Start: 1562373

End: 1562690

Strand: Direct

Name: mdcC [H]

Synonym: Rru_A1323

Alternate gene names: 83592659

Gene position: 1562373-1562690 (Clockwise)

Preceding gene: 83592658

Following gene: 83592660

Centisome position: 35.89

GC content: 64.15

Gene sequence:

>318_bases
ATGGCTTTGAACACCCTGGAATTCGACATCAAGCATGACGCGGGCACTCCGGTTCTGAAGGCCCCCGTCCACATCGGCGT
CGTCGGGTCGGGCGATATGGAAGTGCTGATGGAGCCCAAGGCTCTGGGCGGCGCGGTTTCGGTGCGCATCGTCACCCCGG
TCACCGGTTTCGATGCGCTGTGGAAGCGCGTTCTGGAAGCCTTCGTGACCGAATCCGCGCTCGCCGACGTCCGTGTCGAG
ATCAACGACAACAATGCCACCCCCGCCGTGGTCCTGCTGCGCTTGCGCCAGGCCCTGGCGGAAGCGGCTGGCAAGTAA

Upstream 100 bases:

>100_bases
TGCTCGCGGCCCGCAATATCCGCGATCTGGTGAGCTGGTCCGGTGGGCTCTACAACCCGCCCGCGCGGTTCCGCAACTGG
TGATAAAGGACCTTTGAACC

Downstream 100 bases:

>100_bases
GGAGAGCAGCGATATGCCGAACTGGAAAGCCCTTCAGGACAGCAGCTTCCTTGAAGCCAACGCCCGCGATCGCGCCCTTG
GCGTGGTTGACGAGGGGACC

Product: malonate decarboxylase subunit delta

Products: NA

Alternate protein names: Malonate decarboxylase subunit delta [H]

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MALNTLEFDIKHDAGTPVLKAPVHIGVVGSGDMEVLMEPKALGGAVSVRIVTPVTGFDALWKRVLEAFVTESALADVRVE
INDNNATPAVVLLRLRQALAEAAGK

Sequences:

>Translated_105_residues
MALNTLEFDIKHDAGTPVLKAPVHIGVVGSGDMEVLMEPKALGGAVSVRIVTPVTGFDALWKRVLEAFVTESALADVRVE
INDNNATPAVVLLRLRQALAEAAGK
>Mature_104_residues
ALNTLEFDIKHDAGTPVLKAPVHIGVVGSGDMEVLMEPKALGGAVSVRIVTPVTGFDALWKRVLEAFVTESALADVRVEI
NDNNATPAVVLLRLRQALAEAAGK

Specific function: Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mdcC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009662
- ProDom:   PD015450 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: NA

Molecular weight: Translated: 11088; Mature: 10957

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNTLEFDIKHDAGTPVLKAPVHIGVVGSGDMEVLMEPKALGGAVSVRIVTPVTGFDAL
CCCCCEEEEEECCCCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHH
WKRVLEAFVTESALADVRVEINDNNATPAVVLLRLRQALAEAAGK
HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALNTLEFDIKHDAGTPVLKAPVHIGVVGSGDMEVLMEPKALGGAVSVRIVTPVTGFDAL
CCCCEEEEEECCCCCCEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHH
WKRVLEAFVTESALADVRVEINDNNATPAVVLLRLRQALAEAAGK
HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9128730; 8664258 [H]