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The map label for this gene is ybgF [C]

Identifier: 83592432

GI number: 83592432

Start: 1285359

End: 1286198

Strand: Direct

Name: ybgF [C]

Synonym: Rru_A1096

Alternate gene names: 83592432

Gene position: 1285359-1286198 (Clockwise)

Preceding gene: 83592431

Following gene: 83592433

Centisome position: 29.53

GC content: 66.67

Gene sequence:

>840_bases
ATGTCATCCCTTGCCCTACGTAGTCCCGCCCTGGCTCTGGCCCTGACCCTGGGCGGCCTGTTGCTGTGCGGTCCGGTTCA
GGCCCAGCAGGCCAATTCCGCCAATGACATGGTGGGCCGCATGCAGTACCGCATCTCGGAACTTGAACGTCTGGTTCAGG
ATCTGACGGGCAAGGTCGAGCAGTCGCTCTATGAGAACCGCCAGCTTCAGACCAAGCTCGAGAACGCCCAGAGCGATATC
GATTTCCGCCTGAACGCCTTGGAATCGGCCGGGCCGGCGGCGGCCGCGCCGGCCAATTCGGTGCCCTCGAGCGCCCGGCC
GACGGCCTCGGCCGGCGCCGGCAAGCAGGGCACTCCGGCCCCGGCCGAAGGGGTTTTGGGCTTCCCCGGCAAGACCGCCC
CGGCCCAGGGCGCGGCGAGCGCCGCGCGTCCGGCCGCCGCCGGCGCCTTGCCCGCCGGATCGGAGAACGATCAGTACAAT
TACGCCTTTTCGCTGCTGCGCAACGCCGATTACCCGGCGGCCGAACAGGCCTTCAAGGCCTTTCTCGACCAGCATCCCAA
GGGCAGCCTCGCCGGCAACGCCCAATATTGGCTGGGCGAGACCTATTATGTGCGCGGCGATTACGAACAGGCCGCCGTCG
CCTTCATGGGCGGCTATCAAAGCCACCCTGACAGCAGCAAGGGCCCCGATAATCTGCTGAAGCTGGGACTGGCCATGGCC
AATCTCGGCAAGTCCAAGGAAGCCTGCGCGGCGTTCGGCCGCCTCGAGTCGCAATACCCCAAGGCCGCCGACGCCATCAA
GCGCCGGGCCAAGGAAGGCATGTCCAAGCTCGGCTGCTAA

Upstream 100 bases:

>100_bases
ATGAAGGGGGCTCGGGTCCCTTCGGCTCAAGGCCCTGGTTTTGGTCATTGTTCCGCGCGTGCCCGTCGCGTGGCGGACCT
GGAAGAATTGAGGAGGTGGC

Downstream 100 bases:

>100_bases
GCGGGCCGAGGCCATGGCGCCCCGTGGGCTGGTCGACGCGAACGGGGTCATCGACGCCGAGGCTTTCGCCGCCCGCATGG
CCGCCCTTGGTCCCTTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSSLALRSPALALALTLGGLLLCGPVQAQQANSANDMVGRMQYRISELERLVQDLTGKVEQSLYENRQLQTKLENAQSDI
DFRLNALESAGPAAAAPANSVPSSARPTASAGAGKQGTPAPAEGVLGFPGKTAPAQGAASAARPAAAGALPAGSENDQYN
YAFSLLRNADYPAAEQAFKAFLDQHPKGSLAGNAQYWLGETYYVRGDYEQAAVAFMGGYQSHPDSSKGPDNLLKLGLAMA
NLGKSKEACAAFGRLESQYPKAADAIKRRAKEGMSKLGC

Sequences:

>Translated_279_residues
MSSLALRSPALALALTLGGLLLCGPVQAQQANSANDMVGRMQYRISELERLVQDLTGKVEQSLYENRQLQTKLENAQSDI
DFRLNALESAGPAAAAPANSVPSSARPTASAGAGKQGTPAPAEGVLGFPGKTAPAQGAASAARPAAAGALPAGSENDQYN
YAFSLLRNADYPAAEQAFKAFLDQHPKGSLAGNAQYWLGETYYVRGDYEQAAVAFMGGYQSHPDSSKGPDNLLKLGLAMA
NLGKSKEACAAFGRLESQYPKAADAIKRRAKEGMSKLGC
>Mature_278_residues
SSLALRSPALALALTLGGLLLCGPVQAQQANSANDMVGRMQYRISELERLVQDLTGKVEQSLYENRQLQTKLENAQSDID
FRLNALESAGPAAAAPANSVPSSARPTASAGAGKQGTPAPAEGVLGFPGKTAPAQGAASAARPAAAGALPAGSENDQYNY
AFSLLRNADYPAAEQAFKAFLDQHPKGSLAGNAQYWLGETYYVRGDYEQAAVAFMGGYQSHPDSSKGPDNLLKLGLAMAN
LGKSKEACAAFGRLESQYPKAADAIKRRAKEGMSKLGC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=247, Percent_Identity=23.8866396761134, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29126; Mature: 28995

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLALRSPALALALTLGGLLLCGPVQAQQANSANDMVGRMQYRISELERLVQDLTGKVE
CCCCCCCCHHHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSLYENRQLQTKLENAQSDIDFRLNALESAGPAAAAPANSVPSSARPTASAGAGKQGTPA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAEGVLGFPGKTAPAQGAASAARPAAAGALPAGSENDQYNYAFSLLRNADYPAAEQAFKA
CCCCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
FLDQHPKGSLAGNAQYWLGETYYVRGDYEQAAVAFMGGYQSHPDSSKGPDNLLKLGLAMA
HHHCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
NLGKSKEACAAFGRLESQYPKAADAIKRRAKEGMSKLGC
HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSLALRSPALALALTLGGLLLCGPVQAQQANSANDMVGRMQYRISELERLVQDLTGKVE
CCCCCCCHHHHHHHHHHHHHEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSLYENRQLQTKLENAQSDIDFRLNALESAGPAAAAPANSVPSSARPTASAGAGKQGTPA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAEGVLGFPGKTAPAQGAASAARPAAAGALPAGSENDQYNYAFSLLRNADYPAAEQAFKA
CCCCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
FLDQHPKGSLAGNAQYWLGETYYVRGDYEQAAVAFMGGYQSHPDSSKGPDNLLKLGLAMA
HHHCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
NLGKSKEACAAFGRLESQYPKAADAIKRRAKEGMSKLGC
HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]