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The map label for this gene is htr5 [H]

Identifier: 83592389

GI number: 83592389

Start: 1245766

End: 1247328

Strand: Reverse

Name: htr5 [H]

Synonym: Rru_A1053

Alternate gene names: 83592389

Gene position: 1247328-1245766 (Counterclockwise)

Preceding gene: 83592391

Following gene: 83592385

Centisome position: 28.66

GC content: 65.07

Gene sequence:

>1563_bases
ATGCCCCTGGCCCTTGGAGAAGACCCCATCCTTTCCCCTCCCTCCAATGTGGCTTTTCGGTCTAATGGCTTCGGGGGCCT
ATGGGGTCTGTTGCCCCGGGCGCTGGGCGGCGGAGAAAGCTTCCGCGAGGCCCTGGACCAGTTGCCGGTGCCGGTGATCC
TGGCCCGGCCCGACATGGTGATTTCGTGGATGAACCGCGCCACCCGCCGCTCGCTCGAGCGCATCGCCCATCTGCTGCCG
GTCGCCCCCGAGGACGTGGTCGGCCAGTCGATCGACGTCTTCCACCGCCATCCAGCCCATCAGCGCGCCCTGATGGCCAA
ACCCGGCGCCCTCCCCCACCACGCGGTGATCGCGCTCGGCGACGAGTTCCTTGATCTGCAGATCGAGGCCCTAGGCGAGC
GGGCGGCGCCCAAGGCCTATGTGCTGACCTGGAGCATCGTGACCGAACGGGTCAAGGCCGAACGGCTGGTGAGCCAGCGC
AACCATATGCTCGATCAGCTGCCGGTCAACGTCATGCTGGCCGATCCCAAGACCATGCTGATCACCTATGCCAACCGCAC
CAGCCTCGACACCCTGGCCAAGCTCCAGCATCTGATGTCGTTTTCGGTGAGCGATCTGGTCGGGCGCAGCATCGATATCT
TCCACAAGAACCCCAGCCACCAGCACGCCATCTTGTCCGACCCCAAGCGCCTGCCCTTCCATTCGAAGATCCGCCTGGGA
CCCGAAACCCTGGACCTGCGGGTTACGGCGATTTTCGGCGAGCGGGGGGAGTATGAGGCGATGCTGCTCTGCTGGTCGGT
CTCGACTCATCTGGTGAAATTGGCCGATGATTTCGAGAGTCATATCAAGGGCTTCGCCGATATGATCGGCTCGGCGTCGA
CCCAATTGCACAGCACCGCCGAAAGCATGAGCGGCGCGGCCGAGGAAGCCTCGTCCCAGGCCGCGGGCGTATCGGCCGCC
GCCGAGGAACTAAGCGCCTCGGTCCAGGAACTGGGATGCCGTCTCAAGGCCAGCCAAACCTTGCTTGAGCAGGCGCGCGC
CGCCGCCCAGACCAGCACCAGCGAGGTCATCCAGTTACGCGACGCCGCCCAGCAGATCGATTCGGTCATCGATGTCATCG
GCGAGATCGCCGGCCAGACCAATCTTTTGGCGCTCAACGCCACCATCGAGGCCGCGCGGGCCGGTGAGCATGGGCGGGGC
TTCGCCGTGGTCGCCGGCGAGGTCAAGGACCTGTCGGCGCAAACCGCCAAGGCCACCGGGTCGATCACCGGCGAGATCCG
CAATATTCAGACCAGCACCGACGCCACGGTGGGCACCATCGATACCATCGTCACCCTGGTCGAGGAAATCACCGGAGTGT
TCAGCGCCATGCAGGATTCGATCGCCATCCAAAGCGAGGCCACCCGCGAGGTCGCCCGCAACATCACCGGCGTCAGCGAA
GCCTCGTCGATCACCAGCAGCGCCGCCTGCGACACGATGGGCGCGGCCAGCGAATTGTCGCGCACGGCCGAGGCCCTGCG
CGGCCAGGTCGATAATTTCCTGGCGACCGTGCGCAAACTATAA

Upstream 100 bases:

>100_bases
TCATCGGCCTTTTCCGAGCTCCCACTTTCGTTGGCCCCAGGGGATGACAAGCCGGTTCGCGGTTCCCATTGTCTCCAGAC
ACACCTAAAAGGATAGAGAT

Downstream 100 bases:

>100_bases
GGGGCGGCAGGTCGGGTTCAGGTAATGCGAAAACGCCTCAAGGCTTCGGCCAGATCGGCGCCGAAGCTGCCGCCCTTGCT
CAGATAGGCCGCGCTGGCGG

Product: chemotaxis sensory transducer

Products: NA

Alternate protein names: HTP IV [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MPLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPVPVILARPDMVISWMNRATRRSLERIAHLLP
VAPEDVVGQSIDVFHRHPAHQRALMAKPGALPHHAVIALGDEFLDLQIEALGERAAPKAYVLTWSIVTERVKAERLVSQR
NHMLDQLPVNVMLADPKTMLITYANRTSLDTLAKLQHLMSFSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLG
PETLDLRVTAIFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTAESMSGAAEEASSQAAGVSAA
AEELSASVQELGCRLKASQTLLEQARAAAQTSTSEVIQLRDAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRG
FAVVAGEVKDLSAQTAKATGSITGEIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATREVARNITGVSE
ASSITSSAACDTMGAASELSRTAEALRGQVDNFLATVRKL

Sequences:

>Translated_520_residues
MPLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPVPVILARPDMVISWMNRATRRSLERIAHLLP
VAPEDVVGQSIDVFHRHPAHQRALMAKPGALPHHAVIALGDEFLDLQIEALGERAAPKAYVLTWSIVTERVKAERLVSQR
NHMLDQLPVNVMLADPKTMLITYANRTSLDTLAKLQHLMSFSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLG
PETLDLRVTAIFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTAESMSGAAEEASSQAAGVSAA
AEELSASVQELGCRLKASQTLLEQARAAAQTSTSEVIQLRDAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRG
FAVVAGEVKDLSAQTAKATGSITGEIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATREVARNITGVSE
ASSITSSAACDTMGAASELSRTAEALRGQVDNFLATVRKL
>Mature_519_residues
PLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPVPVILARPDMVISWMNRATRRSLERIAHLLPV
APEDVVGQSIDVFHRHPAHQRALMAKPGALPHHAVIALGDEFLDLQIEALGERAAPKAYVLTWSIVTERVKAERLVSQRN
HMLDQLPVNVMLADPKTMLITYANRTSLDTLAKLQHLMSFSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLGP
ETLDLRVTAIFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTAESMSGAAEEASSQAAGVSAAA
EELSASVQELGCRLKASQTLLEQARAAAQTSTSEVIQLRDAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRGF
AVVAGEVKDLSAQTAKATGSITGEIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATREVARNITGVSEA
SSITSSAACDTMGAASELSRTAEALRGQVDNFLATVRKL

Specific function: Potentially involved in chemo- or phototactic signal transduction [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=248, Percent_Identity=30.6451612903226, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI2367378, Length=231, Percent_Identity=33.7662337662338, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788194, Length=225, Percent_Identity=31.1111111111111, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787690, Length=246, Percent_Identity=30.0813008130081, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789453, Length=229, Percent_Identity=30.1310043668122, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 55616; Mature: 55485

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPVPVILARPDMV
CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCHHH
ISWMNRATRRSLERIAHLLPVAPEDVVGQSIDVFHRHPAHQRALMAKPGALPHHAVIALG
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEEC
DEFLDLQIEALGERAAPKAYVLTWSIVTERVKAERLVSQRNHMLDQLPVNVMLADPKTML
CHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
ITYANRTSLDTLAKLQHLMSFSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLG
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEC
PETLDLRVTAIFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTA
CCCEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ESMSGAAEEASSQAAGVSAAAEELSASVQELGCRLKASQTLLEQARAAAQTSTSEVIQLR
HHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
DAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRGFAVVAGEVKDLSAQTAKATG
HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCC
SITGEIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATREVARNITGVSE
CCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ASSITSSAACDTMGAASELSRTAEALRGQVDNFLATVRKL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPVPVILARPDMV
CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCHHH
ISWMNRATRRSLERIAHLLPVAPEDVVGQSIDVFHRHPAHQRALMAKPGALPHHAVIALG
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEEC
DEFLDLQIEALGERAAPKAYVLTWSIVTERVKAERLVSQRNHMLDQLPVNVMLADPKTML
CHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
ITYANRTSLDTLAKLQHLMSFSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLG
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEC
PETLDLRVTAIFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTA
CCCEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ESMSGAAEEASSQAAGVSAAAEELSASVQELGCRLKASQTLLEQARAAAQTSTSEVIQLR
HHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
DAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRGFAVVAGEVKDLSAQTAKATG
HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCC
SITGEIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATREVARNITGVSE
CCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ASSITSSAACDTMGAASELSRTAEALRGQVDNFLATVRKL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8674984; 11016950 [H]