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The map label for this gene is rpsU

Identifier: 83592379

GI number: 83592379

Start: 1236100

End: 1236342

Strand: Reverse

Name: rpsU

Synonym: Rru_A1043

Alternate gene names: 83592379

Gene position: 1236342-1236100 (Counterclockwise)

Preceding gene: 83592382

Following gene: 83592376

Centisome position: 28.4

GC content: 61.32

Gene sequence:

>243_bases
ATGGGAGGGGGGTCTCAAGTCGAAGGAGAGAGAGCCCTGGTTCAGGTTCTGGTGCGCGACAACAACGTCGATCAGGCGTT
GAAGGCGCTGAAGAAGAAGATGCAGCGCGAAGGCGTGTTTCGCGAGATGAAGCTTCGCCGCAATTTCGAGAAGCCCTCCG
AGAAGCGGGCCCGCGAAAAGGCCGAAGCCGTGCGCCGCGCCCGCAAGCTCGAACGCAAGCGTCTAGAGCGCGAAGGCTTC
TAG

Upstream 100 bases:

>100_bases
CCTCCGGGCTGGTCTGACCATGTCCGCACGGTTTGTGTTTCCGATGCTAGATCGGTGACTGTCATAACGCGACCCTCCCC
GCCCCCGGCACAGGCGGTGA

Downstream 100 bases:

>100_bases
GGATTCGGGTGGCAAGGACCTCGTGGTTTTTCCGGGGTCTCGCCGCTTGAAACTTTGGACTCTGGATCAAAGCGCTTGCG
TTGGATGCTGGTCATTCAAC

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MGGGSQVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKLRRNFEKPSEKRAREKAEAVRRARKLERKRLEREGF

Sequences:

>Translated_80_residues
MGGGSQVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKLRRNFEKPSEKRAREKAEAVRRARKLERKRLEREGF
>Mature_79_residues
GGGSQVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKLRRNFEKPSEKRAREKAEAVRRARKLERKRLEREGF

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_RHORT (Q2RVK1)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426131.1
- ProteinModelPortal:   Q2RVK1
- SMR:   Q2RVK1
- STRING:   Q2RVK1
- GeneID:   3833504
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1043
- NMPDR:   fig|1085.1.peg.3328
- eggNOG:   COG0828
- HOGENOM:   HBG708268
- OMA:   EMKLRRH
- ProtClustDB:   PRK00270
- BioCyc:   RRUB269796:RRU_A1043-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- InterPro:   IPR018278
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 9424; Mature: 9293

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGGSQVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKLRRNFEKPSEKRAREK
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AEAVRRARKLERKRLEREGF
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGGSQVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKLRRNFEKPSEKRAREK
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AEAVRRARKLERKRLEREGF
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA