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The map label for this gene is pduB [H]

Identifier: 83592242

GI number: 83592242

Start: 1082456

End: 1083298

Strand: Direct

Name: pduB [H]

Synonym: Rru_A0906

Alternate gene names: 83592242

Gene position: 1082456-1083298 (Clockwise)

Preceding gene: 83592241

Following gene: 83592243

Centisome position: 24.87

GC content: 65.72

Gene sequence:

>843_bases
GTGAAAGACGATCTAGTCGAAAGACTCCTTGGCGAAGTCATTAAGAAGATGGGCGGCAGCGAGCCCCAGGCCCCCGCCGC
GCCCACGCCGGCCCCCGCCGCGCCCACGCCGGCCCCTGCGGAAGCTCCCAAGGCGTTTGGCGCGCTTGGCGGCTGCGGTC
TGACCGAATTCGTGGGAACGGCGATCGGCCACACCATTGGTTTGGTCATCGCCAATGTGGATCCGCTGCTCCACGAAAAG
ATGAAGATCAACCCGAAGTACCGCTCCATCGGCATCATCGGCGCCCGCACCGGTGCCGGCCCGCATATCTTCGCCGCCGA
CGAAGCCGTCAAGGCGACGAACAGCGAAGTGGTGCTGATCGAACTGGCCCGCGACACCGAAGGTGGCGCCGGTCATGGCT
GCTTGATCCTGTTCGGCGCGGAAGACGTGTCCGACGCCCGTCGGGCCGTTGAGGTGACCCTGAACGAAGTGCATCGCACC
ATGGGCGATGTCTATGGCACGCCGGCCGGCCATCTGGAATTCCAGTACACGGCGCGGGCCAGTGGGGCGCTGAACAAAGC
CTTTGGCGCTCCGCTCGGTCAGGCCTTCGCCATCACCGTCGGCGCTCCGGCGGCCATTGGCGTGATGCTCGCCGATACGG
CGGCCAAGGCCGCCACCGTCCAGGCCGTCGGCTACGCTTCGCCGGGCAACGGCACGAGCTTCAGCAACGAGGTCATCTTC
ATGTTCACCGGTGACTCTGGCGCGGTGCGTCAGGCCGTCATCGCCGCGCGCGACGTTGGCAAGACGTTGCTGGCGACGCT
TGATCCCAGCGAGATCAAGTCCACCACCACGCCGTACATCTAA

Upstream 100 bases:

>100_bases
CATCCCGCGGCCCCACACCGAAGTGGAAAAGATCCTGCCGCGCGGCCTCTCCGCTTCGGCGGCCCAATAAGCACCCCGAT
CAGGACAGGAGGGATTTGCC

Downstream 100 bases:

>100_bases
CGGCTTAGGGGAGGAACCACCATGGCGCAACTGAGCCTCGGGCTGATCGAGACGATCGGCCTCGCAGCAGCCATCGAAGC
CGCCGACGCGGCGGTCAAAT

Product: polyhedral shell protein, EutL/PduB type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKDDLVERLLGEVIKKMGGSEPQAPAAPTPAPAAPTPAPAEAPKAFGALGGCGLTEFVGTAIGHTIGLVIANVDPLLHEK
MKINPKYRSIGIIGARTGAGPHIFAADEAVKATNSEVVLIELARDTEGGAGHGCLILFGAEDVSDARRAVEVTLNEVHRT
MGDVYGTPAGHLEFQYTARASGALNKAFGAPLGQAFAITVGAPAAIGVMLADTAAKAATVQAVGYASPGNGTSFSNEVIF
MFTGDSGAVRQAVIAARDVGKTLLATLDPSEIKSTTTPYI

Sequences:

>Translated_280_residues
MKDDLVERLLGEVIKKMGGSEPQAPAAPTPAPAAPTPAPAEAPKAFGALGGCGLTEFVGTAIGHTIGLVIANVDPLLHEK
MKINPKYRSIGIIGARTGAGPHIFAADEAVKATNSEVVLIELARDTEGGAGHGCLILFGAEDVSDARRAVEVTLNEVHRT
MGDVYGTPAGHLEFQYTARASGALNKAFGAPLGQAFAITVGAPAAIGVMLADTAAKAATVQAVGYASPGNGTSFSNEVIF
MFTGDSGAVRQAVIAARDVGKTLLATLDPSEIKSTTTPYI
>Mature_280_residues
MKDDLVERLLGEVIKKMGGSEPQAPAAPTPAPAAPTPAPAEAPKAFGALGGCGLTEFVGTAIGHTIGLVIANVDPLLHEK
MKINPKYRSIGIIGARTGAGPHIFAADEAVKATNSEVVLIELARDTEGGAGHGCLILFGAEDVSDARRAVEVTLNEVHRT
MGDVYGTPAGHLEFQYTARASGALNKAFGAPLGQAFAITVGAPAAIGVMLADTAAKAATVQAVGYASPGNGTSFSNEVIF
MFTGDSGAVRQAVIAARDVGKTLLATLDPSEIKSTTTPYI

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4816

COG function: function code E; Ethanolamine utilization protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EutL/PduB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009193
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 28531; Mature: 28531

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDDLVERLLGEVIKKMGGSEPQAPAAPTPAPAAPTPAPAEAPKAFGALGGCGLTEFVGT
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHH
AIGHTIGLVIANVDPLLHEKMKINPKYRSIGIIGARTGAGPHIFAADEAVKATNSEVVLI
HHHHHHHHEEECCCHHHHHHHCCCCCEEEEEEEEECCCCCCEEEECCHHHHCCCCCEEEE
ELARDTEGGAGHGCLILFGAEDVSDARRAVEVTLNEVHRTMGDVYGTPAGHLEFQYTARA
EEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
SGALNKAFGAPLGQAFAITVGAPAAIGVMLADTAAKAATVQAVGYASPGNGTSFSNEVIF
CCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEE
MFTGDSGAVRQAVIAARDVGKTLLATLDPSEIKSTTTPYI
EEECCCCHHHHHHHHHHHHHHHHHEECCHHHHHCCCCCCC
>Mature Secondary Structure
MKDDLVERLLGEVIKKMGGSEPQAPAAPTPAPAAPTPAPAEAPKAFGALGGCGLTEFVGT
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHH
AIGHTIGLVIANVDPLLHEKMKINPKYRSIGIIGARTGAGPHIFAADEAVKATNSEVVLI
HHHHHHHHEEECCCHHHHHHHCCCCCEEEEEEEEECCCCCCEEEECCHHHHCCCCCEEEE
ELARDTEGGAGHGCLILFGAEDVSDARRAVEVTLNEVHRTMGDVYGTPAGHLEFQYTARA
EEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
SGALNKAFGAPLGQAFAITVGAPAAIGVMLADTAAKAATVQAVGYASPGNGTSFSNEVIF
CCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEE
MFTGDSGAVRQAVIAARDVGKTLLATLDPSEIKSTTTPYI
EEECCCCHHHHHHHHHHHHHHHHHEECCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609 [H]