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The map label for this gene is oppA [H]

Identifier: 83591931

GI number: 83591931

Start: 702661

End: 704298

Strand: Reverse

Name: oppA [H]

Synonym: Rru_A0592

Alternate gene names: 83591931

Gene position: 704298-702661 (Counterclockwise)

Preceding gene: 83591946

Following gene: 83591930

Centisome position: 16.18

GC content: 61.78

Gene sequence:

>1638_bases
ATGAGCGATCAGACGAAACGGACTCCACAGGGCAAACCCGGTTTTGGCGCGCTGGGCCGCGCCTTGGCCTTTGGGCTGGG
ATTGGCGGTTGTCGGCGGCGCGGCGGGCCCCTGGGCCCCGGCGGCCCAGGCGGCGGGCGTGCTACGCATCGGCAATGACG
GCGAGCCGCAATCGATGGATCCGCATTTCGTCTCGACGGTTCAGACCTCGCGCCTGCTTGACGATATGTATCTGGCGCTG
GTCACCTTCGGCGCCAAGGGCGAGGCGATCCCCGGCGCGGCGGAACGCTGGACGATTTCGCCCGATGGCCTGACCTATAC
CTTCACCCTGCGCGACCACACGTGGTCGGATGGCACCCCGGTCACCGCCGAGGATTTCGTCTATTCCTGGCGCCGCGTTC
TCGATCCGGCGATGGGCGCCGAATACGCGTCGCTGGCCTATATCATCAAGGGGGCCGAGGCCTATAACAGCGGCCAGGGC
AAGGTCGAGGATGTCGCGGCCAAGGCGCTTGACGCCAAAACCCTGGAAGTCACCCTGACCAGCCCGGCGCCCTATTTCCT
GGCCCAGTTGACCCATCAGGTCTTCATGCCCGTGCCCAAGCATGTGGTGGAGAAATACGGCCGCGACTGGACCAAGCCCG
AGACCTTCGTCGTCAACGGTGCCTATAAACTGGCAAGCTGGCTGCCCAACGTCGAAGCCAAGCTGGTCAAGAACGAAAAC
TTCTATGACGCCAAGGATGTCTTCTTCGACGAAGTGATCTATTACACTTACGAAGACCGTACGGCGATGCAGAAGCGCTA
TCGCGCCGGCGAGCTTGATATCTGCCGCGAGATCGCGTCCGAACAGATCACTTGGCTGCGCGACAATCTGGCCGATTCCT
TGCGCATCGCCCCCTACGCCGGGATCTATGACTACGCCTTCAACACCACGCAAAAGCCCTTTGACGATCTTCGCGTCCGT
CAGGCCCTGACCATGGCGGTCGATGTCGAGGCGATTTCCGAAAAGGTCCTGCGCACCGGCGAATTACCCGCTTGGTCCTT
CGTGCCGCCGGGGGTCGAGAATTACACCACCCCGGCCACCGTCGCCTGGAAGGACGTGCCGTTCAAGGAGCGCCAGGAAA
AGGCCCGCGCCCTGCTCGCCGAAGCCGGTTTCAGCAAGGACAAGCCGCTGACCTTCACCCTGCGCTACAACACCTCGGAA
AATCACAAGCGCGTCGCCGTCGCCATCGCCTCGATGTGGAAGCAGATCGGCGTCTCGGTCGAGCTGTTCAACACCGATGG
CAAGATCCACTACGCCGACCTCAAGCAAAAGGCCTTCCAGGTCGCCCGCGAAGGCTGGATCGCCGATTACAACGACCCGC
AGAGCTTCCTGTTCAAGATGGAAGGCAAGACCGGACCGCTGAATTATTCCGGCTATGACAACCCGGAATACAACGCGCTG
ATGGACGAGGGCGCCCTGACCATCGATCTGGCCAAGCGCGCCGAGATCCTGAAGAAAGCCGAAGCCCTGGCCATGCGCGA
TGTGCCGGTTATGCCGATTTACTACTACGTCTCCAAGCAGTTGGTCTCGCCCAAGCTGGTCGGTTGGCACGACAACGCGC
TCGACAAGCATGTCACGCGCTTCCTGTCGCTGAAGTAA

Upstream 100 bases:

>100_bases
CGATGCGATCACAGTCCCAGGCTGCAACCGACCGCCGCCGCGCCCGCGCGTTGGACGGGCACGGACCACAAGATCCTTTC
ATCAGGGGAGAAAACGACAG

Downstream 100 bases:

>100_bases
AAGCTAGATCACCGTCTTTGGGGAAGGCCCAGGAGCGAACCGCGTTGAAAGGGCCCCCCTTTTGCGCGGAGTGTTCGCTC
CGGGGTCGATGAGAGAGAGC

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 544

Protein sequence:

>545_residues
MSDQTKRTPQGKPGFGALGRALAFGLGLAVVGGAAGPWAPAAQAAGVLRIGNDGEPQSMDPHFVSTVQTSRLLDDMYLAL
VTFGAKGEAIPGAAERWTISPDGLTYTFTLRDHTWSDGTPVTAEDFVYSWRRVLDPAMGAEYASLAYIIKGAEAYNSGQG
KVEDVAAKALDAKTLEVTLTSPAPYFLAQLTHQVFMPVPKHVVEKYGRDWTKPETFVVNGAYKLASWLPNVEAKLVKNEN
FYDAKDVFFDEVIYYTYEDRTAMQKRYRAGELDICREIASEQITWLRDNLADSLRIAPYAGIYDYAFNTTQKPFDDLRVR
QALTMAVDVEAISEKVLRTGELPAWSFVPPGVENYTTPATVAWKDVPFKERQEKARALLAEAGFSKDKPLTFTLRYNTSE
NHKRVAVAIASMWKQIGVSVELFNTDGKIHYADLKQKAFQVAREGWIADYNDPQSFLFKMEGKTGPLNYSGYDNPEYNAL
MDEGALTIDLAKRAEILKKAEALAMRDVPVMPIYYYVSKQLVSPKLVGWHDNALDKHVTRFLSLK

Sequences:

>Translated_545_residues
MSDQTKRTPQGKPGFGALGRALAFGLGLAVVGGAAGPWAPAAQAAGVLRIGNDGEPQSMDPHFVSTVQTSRLLDDMYLAL
VTFGAKGEAIPGAAERWTISPDGLTYTFTLRDHTWSDGTPVTAEDFVYSWRRVLDPAMGAEYASLAYIIKGAEAYNSGQG
KVEDVAAKALDAKTLEVTLTSPAPYFLAQLTHQVFMPVPKHVVEKYGRDWTKPETFVVNGAYKLASWLPNVEAKLVKNEN
FYDAKDVFFDEVIYYTYEDRTAMQKRYRAGELDICREIASEQITWLRDNLADSLRIAPYAGIYDYAFNTTQKPFDDLRVR
QALTMAVDVEAISEKVLRTGELPAWSFVPPGVENYTTPATVAWKDVPFKERQEKARALLAEAGFSKDKPLTFTLRYNTSE
NHKRVAVAIASMWKQIGVSVELFNTDGKIHYADLKQKAFQVAREGWIADYNDPQSFLFKMEGKTGPLNYSGYDNPEYNAL
MDEGALTIDLAKRAEILKKAEALAMRDVPVMPIYYYVSKQLVSPKLVGWHDNALDKHVTRFLSLK
>Mature_544_residues
SDQTKRTPQGKPGFGALGRALAFGLGLAVVGGAAGPWAPAAQAAGVLRIGNDGEPQSMDPHFVSTVQTSRLLDDMYLALV
TFGAKGEAIPGAAERWTISPDGLTYTFTLRDHTWSDGTPVTAEDFVYSWRRVLDPAMGAEYASLAYIIKGAEAYNSGQGK
VEDVAAKALDAKTLEVTLTSPAPYFLAQLTHQVFMPVPKHVVEKYGRDWTKPETFVVNGAYKLASWLPNVEAKLVKNENF
YDAKDVFFDEVIYYTYEDRTAMQKRYRAGELDICREIASEQITWLRDNLADSLRIAPYAGIYDYAFNTTQKPFDDLRVRQ
ALTMAVDVEAISEKVLRTGELPAWSFVPPGVENYTTPATVAWKDVPFKERQEKARALLAEAGFSKDKPLTFTLRYNTSEN
HKRVAVAIASMWKQIGVSVELFNTDGKIHYADLKQKAFQVAREGWIADYNDPQSFLFKMEGKTGPLNYSGYDNPEYNALM
DEGALTIDLAKRAEILKKAEALAMRDVPVMPIYYYVSKQLVSPKLVGWHDNALDKHVTRFLSLK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=550, Percent_Identity=37.4545454545455, Blast_Score=344, Evalue=7e-96,
Organism=Escherichia coli, GI87081878, Length=482, Percent_Identity=36.7219917012448, Blast_Score=313, Evalue=3e-86,
Organism=Escherichia coli, GI1789397, Length=490, Percent_Identity=35.3061224489796, Blast_Score=295, Evalue=7e-81,
Organism=Escherichia coli, GI1789966, Length=550, Percent_Identity=25.0909090909091, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1787052, Length=522, Percent_Identity=24.904214559387, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787762, Length=496, Percent_Identity=23.991935483871, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787551, Length=440, Percent_Identity=24.0909090909091, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1789887, Length=406, Percent_Identity=27.0935960591133, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60764; Mature: 60632

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQTKRTPQGKPGFGALGRALAFGLGLAVVGGAAGPWAPAAQAAGVLRIGNDGEPQSMD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCCCCCCCC
PHFVSTVQTSRLLDDMYLALVTFGAKGEAIPGAAERWTISPDGLTYTFTLRDHTWSDGTP
CHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCC
VTAEDFVYSWRRVLDPAMGAEYASLAYIIKGAEAYNSGQGKVEDVAAKALDAKTLEVTLT
CCHHHHHHHHHHHHCHHHCCHHHHHHHHEECHHHCCCCCCHHHHHHHHHHCCEEEEEEEC
SPAPYFLAQLTHQVFMPVPKHVVEKYGRDWTKPETFVVNGAYKLASWLPNVEAKLVKNEN
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCC
FYDAKDVFFDEVIYYTYEDRTAMQKRYRAGELDICREIASEQITWLRDNLADSLRIAPYA
CCCHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
GIYDYAFNTTQKPFDDLRVRQALTMAVDVEAISEKVLRTGELPAWSFVPPGVENYTTPAT
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
VAWKDVPFKERQEKARALLAEAGFSKDKPLTFTLRYNTSENHKRVAVAIASMWKQIGVSV
EEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEE
ELFNTDGKIHYADLKQKAFQVAREGWIADYNDPQSFLFKMEGKTGPLNYSGYDNPEYNAL
EEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCHHH
MDEGALTIDLAKRAEILKKAEALAMRDVPVMPIYYYVSKQLVSPKLVGWHDNALDKHVTR
HCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHH
FLSLK
HHCCC
>Mature Secondary Structure 
SDQTKRTPQGKPGFGALGRALAFGLGLAVVGGAAGPWAPAAQAAGVLRIGNDGEPQSMD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCCCCCCCC
PHFVSTVQTSRLLDDMYLALVTFGAKGEAIPGAAERWTISPDGLTYTFTLRDHTWSDGTP
CHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCC
VTAEDFVYSWRRVLDPAMGAEYASLAYIIKGAEAYNSGQGKVEDVAAKALDAKTLEVTLT
CCHHHHHHHHHHHHCHHHCCHHHHHHHHEECHHHCCCCCCHHHHHHHHHHCCEEEEEEEC
SPAPYFLAQLTHQVFMPVPKHVVEKYGRDWTKPETFVVNGAYKLASWLPNVEAKLVKNEN
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCC
FYDAKDVFFDEVIYYTYEDRTAMQKRYRAGELDICREIASEQITWLRDNLADSLRIAPYA
CCCHHHHHHHHEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
GIYDYAFNTTQKPFDDLRVRQALTMAVDVEAISEKVLRTGELPAWSFVPPGVENYTTPAT
CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
VAWKDVPFKERQEKARALLAEAGFSKDKPLTFTLRYNTSENHKRVAVAIASMWKQIGVSV
EEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEE
ELFNTDGKIHYADLKQKAFQVAREGWIADYNDPQSFLFKMEGKTGPLNYSGYDNPEYNAL
EEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCHHH
MDEGALTIDLAKRAEILKKAEALAMRDVPVMPIYYYVSKQLVSPKLVGWHDNALDKHVTR
HCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHH
FLSLK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]