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The map label for this gene is oppB [H]

Identifier: 83591930

GI number: 83591930

Start: 701555

End: 702481

Strand: Reverse

Name: oppB [H]

Synonym: Rru_A0591

Alternate gene names: 83591930

Gene position: 702481-701555 (Counterclockwise)

Preceding gene: 83591931

Following gene: 83591929

Centisome position: 16.14

GC content: 62.68

Gene sequence:

>927_bases
ATGCTACGTTTTATCCTCAAGCGGCTGATGATCGCCGTACCCACCTTGCTGGTCATCATCACCGTCGCCTTTTTCATGAT
GCGCATCGCGCCAGGCGGTCCTTTCGATTCCGAACGCGCCCTGCCGCCCGAAATCGAAAAGAACATCCTGGCCGCCTATA
ATCTCGACAAGCCACTGATCGACCAATACGCCCTTTACCTGGGCGGCATTCTTCACGGCGATTTCGGTCCCTCGTTCAAG
ATCCGTGATTTTTCGGTCAGCGAGTTGATCCTGGCCGGGGCGCCGGCCTCGATCCAACTGGGGCTGGCGGCGCTGATCCT
GGCCTTAAGCGTCGGCGTGACCCTGGGCACCCTAGCCGCCCTCCATCAGAACGAGGCCGGCGATTTCGCGGTGATGGGGG
TGGCGATGGTCGGCATCGTCATTCCCAATTTCGTCATGGCGCCGCTGTTGTCGCTGGTGCTTGGCGTCTATTGGGGGATC
TTGCCGACCTCGGGCTGGGGCGATGGCGCCTTACGCTACAAGATCCTGCCGATCTTCGCCCTCGCCCTGCCGCAGATCGC
CTATATCGCCCGGTTGACCCGGGGATCGATGGTCGAGGTGCTACGCTCGAACTTCGTGCGCACGGCGCGGGCCAAGGGCC
TGGGCGAGCGGCTGGTGGTGATGCGTCACACCCTGAAAGCCGGGCTGCTGCCCGTGGTGTCCTATCTGGGACCGGCGGCG
GCGGCGGTGACCACCGGCTCGGTGGTGGTGGAGACGATCTTCGCCGTCCCGGGCATCGGCACCTATTTCGTCAATGCCGC
GCTCAACCGCGACTATCCGGTGGTGATGGGGGTGGTGATCGTTTACGCCAGCCTGATCATCTTGCTCAATCTCGCCGTCG
ATCTGCTGTATGGCCTGATCGACCCCAAGCTGCGGAGAGCGCGATGA

Upstream 100 bases:

>100_bases
CCGGGGTCGATGAGAGAGAGCGGCGATCGCCCGGACAACCGGTATCGCCTTTTCCGCTCAAAGCTCTCGCCTCCCCGAAG
CGAAGCCGGGGCGTTGAGCC

Downstream 100 bases:

>100_bases
TCGGGTTCCGCGCCCGGGCGGCCAACGCCCTTCTGCCCGCCGATCCCAGCCTGCCGCCGCCGCGTAGCCTGTGGAAGAAC
GCCCGCCGGCGCTTCTATGG

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLIDQYALYLGGILHGDFGPSFK
IRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAALHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGI
LPTSGWGDGALRYKILPIFALALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA
AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLIDPKLRRAR

Sequences:

>Translated_308_residues
MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLIDQYALYLGGILHGDFGPSFK
IRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAALHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGI
LPTSGWGDGALRYKILPIFALALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA
AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLIDPKLRRAR
>Mature_308_residues
MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLIDQYALYLGGILHGDFGPSFK
IRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAALHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGI
LPTSGWGDGALRYKILPIFALALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA
AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLIDPKLRRAR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=55.4098360655738, Blast_Score=351, Evalue=3e-98,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=37.3529411764706, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=37.2990353697749, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=34.3042071197411, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1788504, Length=358, Percent_Identity=29.0502793296089, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=29.3040293040293, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=32.9153605015674, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32979; Mature: 32979

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH
DQYALYLGGILHGDFGPSFKIRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAA
HHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGILPTSGWGDGALRYKILPIFA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHH
AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLI
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKLRRAR
CCHHHCCC
>Mature Secondary Structure
MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH
DQYALYLGGILHGDFGPSFKIRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAA
HHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGILPTSGWGDGALRYKILPIFA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHH
AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLI
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKLRRAR
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]