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The map label for this gene is oppC [H]

Identifier: 83591929

GI number: 83591929

Start: 700650

End: 701558

Strand: Reverse

Name: oppC [H]

Synonym: Rru_A0590

Alternate gene names: 83591929

Gene position: 701558-700650 (Counterclockwise)

Preceding gene: 83591930

Following gene: 83591928

Centisome position: 16.12

GC content: 63.59

Gene sequence:

>909_bases
ATGATCGGGTTCCGCGCCCGGGCGGCCAACGCCCTTCTGCCCGCCGATCCCAGCCTGCCGCCGCCGCGTAGCCTGTGGAA
GAACGCCCGCCGGCGCTTCTATGGCAATCGGGCGGCGATGACCTCGCTGGTCATCCTGATCGCCATCCTCGCCCTAGCGG
TGGTCGGCCCGTTGCTGTCGCCCCATCCCTATGACGAGATCTATTGGGAGGCCATCCAGATGCCGCCCGATTTCGCCAAT
GGCTTCTGGTTCGGCACCGATGGCAACGGCCGCGACCTGTTCGTGCGCACGCTTTACGGCGCCCGGGTCTCGCTGGCCGT
CGGCGTGATCGCCACCACGGTCAGTCTGGTCATCGGCGTCGTCTATGGCGCTATCGCCGGCTATTTCGGCGGGCGCGTCG
ACATGCTGATGATGCGCTTCGTCGATGTGCTGTATTCCCTGCCCTTCATGTTCTTCGTCATCATGTTGATGGTGGTTTTC
GGCCGCAACATCTTCCTGATCTTCGTCGCCCTGGGCGCGGTGGAATGGCTGACCATGGCCCGCATCGTCCGCGGTCAGAC
CATGGCGGTCACCCGCAAGGAATTCATCGAGGCCGCCCACGCCATCGGCGTCTCCGACGCCACGATCATCCGCCGCCACG
TCATTCCCAACATCCTGGGGCCGGTGATCGTCTATGCCACCCTGACCATTCCCCAGGTGGTGCTGACCGAAAGCTTCCTG
TCGTTCCTTGGCCTTGGCGTGCAAGAGCCGCTGACCAGCTGGGGCGTGCTGATTTCGGAAGGGGCGAGGGTTCTGGAGGT
CTCGCCGTGGATGCTGCTGTTCCCGGCCTTTTTCCTGGCGCTCACCTTGTTGTGCTTCAATTTCATTGGCGACGGCTTGC
GCGACGCTCTCGATCCGAAGGATCGGTAA

Upstream 100 bases:

>100_bases
TGATGGGGGTGGTGATCGTTTACGCCAGCCTGATCATCTTGCTCAATCTCGCCGTCGATCTGCTGTATGGCCTGATCGAC
CCCAAGCTGCGGAGAGCGCG

Downstream 100 bases:

>100_bases
TGACTGAGACCCCCTCACCCATCCTCGAAGTGACCCACCTCGACACCCGCTTTTCCACGCCCGATGGCGAGGTCAAGGCG
GTCAACGACCTGTCGTTCAC

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MIGFRARAANALLPADPSLPPPRSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLSPHPYDEIYWEAIQMPPDFAN
GFWFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGVVYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVF
GRNIFLIFVALGAVEWLTMARIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFL
SFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPKDR

Sequences:

>Translated_302_residues
MIGFRARAANALLPADPSLPPPRSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLSPHPYDEIYWEAIQMPPDFAN
GFWFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGVVYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVF
GRNIFLIFVALGAVEWLTMARIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFL
SFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPKDR
>Mature_302_residues
MIGFRARAANALLPADPSLPPPRSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLSPHPYDEIYWEAIQMPPDFAN
GFWFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGVVYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVF
GRNIFLIFVALGAVEWLTMARIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFL
SFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=280, Percent_Identity=60, Blast_Score=327, Evalue=7e-91,
Organism=Escherichia coli, GI1787054, Length=294, Percent_Identity=36.734693877551, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=34.9624060150376, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789964, Length=295, Percent_Identity=34.2372881355932, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=34.8017621145374, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=32.9218106995885, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787549, Length=285, Percent_Identity=27.0175438596491, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33302; Mature: 33302

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGFRARAANALLPADPSLPPPRSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLS
CCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PHPYDEIYWEAIQMPPDFANGFWFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGV
CCCCHHHHHHHHCCCCCCCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVFGRNIFLIFVALGAVEWLTMA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFL
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPK
HHHCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC
>Mature Secondary Structure
MIGFRARAANALLPADPSLPPPRSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLS
CCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PHPYDEIYWEAIQMPPDFANGFWFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGV
CCCCHHHHHHHHCCCCCCCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVFGRNIFLIFVALGAVEWLTMA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFL
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGVQEPLTSWGVLISEGARVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPK
HHHCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]