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The map label for this gene is ykoU [H]

Identifier: 83590909

GI number: 83590909

Start: 2173097

End: 2174017

Strand: Reverse

Name: ykoU [H]

Synonym: Moth_2082

Alternate gene names: 83590909

Gene position: 2174017-2173097 (Counterclockwise)

Preceding gene: 83590913

Following gene: 83590904

Centisome position: 82.7

GC content: 56.89

Gene sequence:

>921_bases
ATGGGCCAGGGCCGGCAATATATACGGTCCCAATTGCTGAAGCGACAGCTCCACTTGACCAACCTGGACAAGGTTTTCTG
GCCGGAAGGTCTGACCAAGTTTGATCTTATCAAGTATTATGTCGACATGGCTCCCTTTCTCTTGCCCTACCTCCGGGATC
GCCCCCTGGTCCTTAAGCGCTACCCGGATGGCATAACAGGGGAGGCCTTTTACCAGAAAGAGTGCCCTGCCTATGCCCCG
GACTGGGTTACGACCCTGCCTGTCTATCATGCTGATAGCAGCAAGACTATTAATTATGTTCTCTGTAATAATGAAGAAAC
CCTGATCTGGCTGGCCAATCAGGGGTGTATCGAGGTCCATGCCTGGCTCTCCAGGGCCGGCCGCCTGGAATACCCCGATA
TCGCCGTCATGGATCTGGACCCAAGTGCGGGGGCAACTTTTAAAGATGTCTTGGATATCGCCCTCCTGGTCCACCAGGCT
TTAAAGGAGTTTAACCTCAGCGGCTATCCTAAAACCTCCGGTGCTACTGGGTTGCATATCTTTATCCCCCTTGAACCTCG
CTGGACCTTTCACCAGGTGACAGCCGCCATGGGGTACCTGGCGCGGCTGGTCGCCGGGGTTTACCCCCGCAAGGCCACCA
CCGAACGGTCGATCCCGAAGCGTAAAGATCGGGTCTACCTGGACTACCTGCAGAACGTCCGCGGACGGTCCATGGCCTTC
CCCTACAGCCTGCGACCCTTACCCGGGGCGCCGGTTTCAACGCCCCTGACCTGGGAGGAGGTAAAGAGGGGGATGTTCAG
CCCCAAAGACTTCAACATCCACACCGCCCGGGAGCGCCTGCAGGCGTATGGCGACCTTTATCGGGGTTTTCTGGCGCAAC
CAAACGATCTGGAACCGCTGCTTAAACTGGCCGGGGTTTAA

Upstream 100 bases:

>100_bases
AACGCCGCAGGTCTACTTCCTTGCGCCTGGCGTATGGGCTTTAACCGGGGTGGGAGATACTAGTGGCAAGCCAGGAATAA
TAGGGGGTTGCGGCATAAAA

Downstream 100 bases:

>100_bases
ACTTCGGACGGATGTCCCTATCAGCCAACCTCTCGGAGCAGAACTATATCCATTAACGTTATTGGCAAACCGGGAAACAG
AGAAGACTTGAAGACAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MGQGRQYIRSQLLKRQLHLTNLDKVFWPEGLTKFDLIKYYVDMAPFLLPYLRDRPLVLKRYPDGITGEAFYQKECPAYAP
DWVTTLPVYHADSSKTINYVLCNNEETLIWLANQGCIEVHAWLSRAGRLEYPDIAVMDLDPSAGATFKDVLDIALLVHQA
LKEFNLSGYPKTSGATGLHIFIPLEPRWTFHQVTAAMGYLARLVAGVYPRKATTERSIPKRKDRVYLDYLQNVRGRSMAF
PYSLRPLPGAPVSTPLTWEEVKRGMFSPKDFNIHTARERLQAYGDLYRGFLAQPNDLEPLLKLAGV

Sequences:

>Translated_306_residues
MGQGRQYIRSQLLKRQLHLTNLDKVFWPEGLTKFDLIKYYVDMAPFLLPYLRDRPLVLKRYPDGITGEAFYQKECPAYAP
DWVTTLPVYHADSSKTINYVLCNNEETLIWLANQGCIEVHAWLSRAGRLEYPDIAVMDLDPSAGATFKDVLDIALLVHQA
LKEFNLSGYPKTSGATGLHIFIPLEPRWTFHQVTAAMGYLARLVAGVYPRKATTERSIPKRKDRVYLDYLQNVRGRSMAF
PYSLRPLPGAPVSTPLTWEEVKRGMFSPKDFNIHTARERLQAYGDLYRGFLAQPNDLEPLLKLAGV
>Mature_305_residues
GQGRQYIRSQLLKRQLHLTNLDKVFWPEGLTKFDLIKYYVDMAPFLLPYLRDRPLVLKRYPDGITGEAFYQKECPAYAPD
WVTTLPVYHADSSKTINYVLCNNEETLIWLANQGCIEVHAWLSRAGRLEYPDIAVMDLDPSAGATFKDVLDIALLVHQAL
KEFNLSGYPKTSGATGLHIFIPLEPRWTFHQVTAAMGYLARLVAGVYPRKATTERSIPKRKDRVYLDYLQNVRGRSMAFP
YSLRPLPGAPVSTPLTWEEVKRGMFSPKDFNIHTARERLQAYGDLYRGFLAQPNDLEPLLKLAGV

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 34954; Mature: 34823

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQGRQYIRSQLLKRQLHLTNLDKVFWPEGLTKFDLIKYYVDMAPFLLPYLRDRPLVLKR
CCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
YPDGITGEAFYQKECPAYAPDWVTTLPVYHADSSKTINYVLCNNEETLIWLANQGCIEVH
CCCCCCCCHHHHCCCCCCCCCCHHCCEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHH
AWLSRAGRLEYPDIAVMDLDPSAGATFKDVLDIALLVHQALKEFNLSGYPKTSGATGLHI
HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
FIPLEPRWTFHQVTAAMGYLARLVAGVYPRKATTERSIPKRKDRVYLDYLQNVRGRSMAF
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEC
PYSLRPLPGAPVSTPLTWEEVKRGMFSPKDFNIHTARERLQAYGDLYRGFLAQPNDLEPL
CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LKLAGV
HHHHCC
>Mature Secondary Structure 
GQGRQYIRSQLLKRQLHLTNLDKVFWPEGLTKFDLIKYYVDMAPFLLPYLRDRPLVLKR
CCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
YPDGITGEAFYQKECPAYAPDWVTTLPVYHADSSKTINYVLCNNEETLIWLANQGCIEVH
CCCCCCCCHHHHCCCCCCCCCCHHCCEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHH
AWLSRAGRLEYPDIAVMDLDPSAGATFKDVLDIALLVHQALKEFNLSGYPKTSGATGLHI
HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
FIPLEPRWTFHQVTAAMGYLARLVAGVYPRKATTERSIPKRKDRVYLDYLQNVRGRSMAF
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEC
PYSLRPLPGAPVSTPLTWEEVKRGMFSPKDFNIHTARERLQAYGDLYRGFLAQPNDLEPL
CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LKLAGV
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]