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The map label for this gene is nrfC [H]

Identifier: 83312388

GI number: 83312388

Start: 3566313

End: 3567041

Strand: Reverse

Name: nrfC [H]

Synonym: amb3289

Alternate gene names: 83312388

Gene position: 3567041-3566313 (Counterclockwise)

Preceding gene: 83312389

Following gene: 83312387

Centisome position: 71.81

GC content: 68.59

Gene sequence:

>729_bases
ATGACCCATTCAAGACGCGACCTGCTCAAGGGCATGGGCCGCATTACCGCCGGTGCCGTCGCCGTGGCCGCAATTCCCGC
CGCCGCCGAGGCGGCCGCCTCTCCGGGCGGCGATCCGGCCCGCCGCTGGGCCATGGTGGTCGACCTCGGCAAGTGCATCG
GCTGTCAGGCCTGCACCATCGGCTGCATCATGGAAAACCGGGTGCCGGCGGACAGCTTCCGCACCTTCGTCTCCACCTAC
GAGGTGACGGAGGGCGACAAGGTCGGCACCTATGTGCTGCCGCGCCTGTGCAACCACTGCTCGGACCCGCCCTGTGTCGG
CGTCTGCCCGGTGGGCGCCACCTTCCAGCAGAAGGACGGGGCGGTGATGGTGGATTCCGACCGCTGCGTCGGTTGCGCCT
ACTGCGTCCAGGCCTGTCCCTATGACGCGCGCTTCATCAACCACGAGACCAATACCGCCGACAAATGCACCTTCTGCGGC
CATCGGGTGGCGGCGGGCCTGCTGCCGGCCTGTGTCGAGACCTGCGTCGGTGGTGCCCGGGTGTTCGGCGATCTCAATGA
GACCGAAGGCGCGGTGCGCCGGCTGCTGGACGCCAACAAGGGGCGGACCAAGGTTCTGAAGCCCGAGCAGGGCACCGCCC
CCAACGTCTATTACATCGGCCTGGACGAGCGCTTCGCCGGCCGGGTCGACGGAACGCCCACCCTGTGGCGGCCGTCGAGC
CACGTTTAG

Upstream 100 bases:

>100_bases
GGGTAAACCCTAATTCCCCTGGGGGAGCCCCCAATACCCGCAAAATTCCAACGGCTATAGCCTGATCTCCGAGACCGATC
CGCTTTTCGGAGTTCCGGGC

Downstream 100 bases:

>100_bases
GAGGGCCCCGTCATGTCGTCTTCCATCACCGAAATCCTGTATGTCAGCCGTGATGTGGCCTGGCTGCCCTGGGCGGTCCA
GTACTTCTTCCTGATCGGTC

Product: Fe-S-cluster-containing hydrogenase components 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTHSRRDLLKGMGRITAGAVAVAAIPAAAEAAASPGGDPARRWAMVVDLGKCIGCQACTIGCIMENRVPADSFRTFVSTY
EVTEGDKVGTYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDARFINHETNTADKCTFCG
HRVAAGLLPACVETCVGGARVFGDLNETEGAVRRLLDANKGRTKVLKPEQGTAPNVYYIGLDERFAGRVDGTPTLWRPSS
HV

Sequences:

>Translated_242_residues
MTHSRRDLLKGMGRITAGAVAVAAIPAAAEAAASPGGDPARRWAMVVDLGKCIGCQACTIGCIMENRVPADSFRTFVSTY
EVTEGDKVGTYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDARFINHETNTADKCTFCG
HRVAAGLLPACVETCVGGARVFGDLNETEGAVRRLLDANKGRTKVLKPEQGTAPNVYYIGLDERFAGRVDGTPTLWRPSS
HV
>Mature_241_residues
THSRRDLLKGMGRITAGAVAVAAIPAAAEAAASPGGDPARRWAMVVDLGKCIGCQACTIGCIMENRVPADSFRTFVSTYE
VTEGDKVGTYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDARFINHETNTADKCTFCGH
RVAAGLLPACVETCVGGARVFGDLNETEGAVRRLLDANKGRTKVLKPEQGTAPNVYYIGLDERFAGRVDGTPTLWRPSSH
V

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=202, Percent_Identity=36.1386138613861, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI2367345, Length=222, Percent_Identity=39.6396396396396, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787872, Length=191, Percent_Identity=37.696335078534, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787122, Length=157, Percent_Identity=39.4904458598726, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787749, Length=224, Percent_Identity=31.6964285714286, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790326, Length=157, Percent_Identity=38.2165605095541, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787478, Length=103, Percent_Identity=42.7184466019417, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787740, Length=115, Percent_Identity=39.1304347826087, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1789370, Length=225, Percent_Identity=31.1111111111111, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789067, Length=181, Percent_Identity=32.0441988950276, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787963, Length=128, Percent_Identity=31.25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI2367245, Length=151, Percent_Identity=33.112582781457, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082179, Length=142, Percent_Identity=33.0985915492958, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87082180, Length=210, Percent_Identity=29.5238095238095, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788811, Length=140, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25690; Mature: 25558

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSRRDLLKGMGRITAGAVAVAAIPAAAEAAASPGGDPARRWAMVVDLGKCIGCQACTI
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHE
GCIMENRVPADSFRTFVSTYEVTEGDKVGTYVLPRLCNHCSDPPCVGVCPVGATFQQKDG
EEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEECCCC
AVMVDSDRCVGCAYCVQACPYDARFINHETNTADKCTFCGHRVAAGLLPACVETCVGGAR
EEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
VFGDLNETEGAVRRLLDANKGRTKVLKPEQGTAPNVYYIGLDERFAGRVDGTPTLWRPSS
HHCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCC
HV
CC
>Mature Secondary Structure 
THSRRDLLKGMGRITAGAVAVAAIPAAAEAAASPGGDPARRWAMVVDLGKCIGCQACTI
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHE
GCIMENRVPADSFRTFVSTYEVTEGDKVGTYVLPRLCNHCSDPPCVGVCPVGATFQQKDG
EEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEECCCC
AVMVDSDRCVGCAYCVQACPYDARFINHETNTADKCTFCGHRVAAGLLPACVETCVGGAR
EEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
VFGDLNETEGAVRRLLDANKGRTKVLKPEQGTAPNVYYIGLDERFAGRVDGTPTLWRPSS
HHCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCC
HV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]