| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is gdhII [H]
Identifier: 83309979
GI number: 83309979
Start: 941324
End: 942076
Strand: Reverse
Name: gdhII [H]
Synonym: amb0880
Alternate gene names: 83309979
Gene position: 942076-941324 (Counterclockwise)
Preceding gene: 83309981
Following gene: 83309975
Centisome position: 18.97
GC content: 69.85
Gene sequence:
>753_bases ATGACCAGTTCCCTCAGCGGCAAAGTCGCCGTCGTCACCGGTGCCAGCAGCGGCATCGGCCATGCCATCGCCCAGCGCTT CCTGGCCGAAGGCGCCAAGGTCGCCGTCTTCGCCCGCAATGCCGCCGCCCTGGCCGACCTCGCCAAGGGCCGCGAGGATT CGGTGCTGGCGGTGACCGGCGACGTCACCTGCGCCGCCGACCTGGAACGGCTGGTGGCCGAAACGGTGAAGCGGTTTGGC GGCGTCGACATGGTCATCCCCAACGCGGGCATCGCCAAGGTGGTGCCGTTCGAGCAGAGCGACGCGGCGGCCATCGACCA CCAGTTCGCCGTCAATTTCACCGGCGCGGTGCAGACGGTGCGCGGCTTCCTGCCCCATATCCGCCAGGGCGGATCGGTGC TGTTCGTCACCACCTTCCTGACCCAGGTCGGCTTTCCCGGCCTGGCCATCTACAGCGCCAGCAAGGCGGCGCTGAAGTCG TTCTCGCAGACCCTGGCCGCCGAACTGGCCCCCAAGGGCATCCGGGTGAACTCGGTCGCCCCCGGCCCCATCGGCACCCC CATCTGGGGCAGCATCGGCCTGCCGGCCGACGTGTTGCAGGCGGTGGCCACCCAGGTGACGGCGCGCCTGATGCCCGGCG CCTTCGGCGAGCCCGGCGACATCGCCGCCACCGCCGCCTTCCTGTGCTCGGATCAGGCCAAGAATATCTGGGGCCAGGAG ATCGTGGTCGACGGCGGCTACACCATCGGCTGA
Upstream 100 bases:
>100_bases TCGTCGGGAATGGAGGGGGCGGCTTGACCGGCCTCAAAGCGGTCCGGGCGCCATCCGTGCGCTTTTGGCTCATCCCTCCC TGTCCAAGGATATAGTCACC
Downstream 100 bases:
>100_bases CCCATCCTCTTCCCCTCCCCCCGCCCCTGGTGGGGGGAGGGCGGGAGGGGGGATCTGGTATTAAACGGCCTCCACGTCCG CGCCCATGGCCAGATTGCCC
Product: dehydrogenase
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFG GVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKS FSQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE IVVDGGYTIG
Sequences:
>Translated_250_residues MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFG GVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKS FSQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE IVVDGGYTIG >Mature_249_residues TSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFGG VDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSF SQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQEI VVDGGYTIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=35.7142857142857, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=34.6456692913386, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=33.7301587301587, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=32.9317269076305, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=37.7659574468085, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=29.5154185022026, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=27.7992277992278, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=36.2162162162162, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.2490118577075, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=29.8969072164948, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=31.1538461538462, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=30.078125, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=29.7435897435897, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=28.4584980237154, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI31542939, Length=245, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI32455239, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5031765, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7657478, Length=196, Percent_Identity=29.5918367346939, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI223718074, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI226371731, Length=208, Percent_Identity=28.8461538461538, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=30.1960784313725, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=25.5208333333333, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=26.890756302521, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=30.3501945525292, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.136546184739, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=33.7209302325581, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=30.0395256916996, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788891, Length=261, Percent_Identity=32.9501915708812, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=28.4584980237154, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787820, Length=213, Percent_Identity=26.7605633802817, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787545, Length=272, Percent_Identity=27.2058823529412, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=28.90625, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=30.4123711340206, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=34.9624060150376, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=36.0594795539033, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=34.8484848484849, Blast_Score=121, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=33.7164750957854, Blast_Score=120, Evalue=5e-28, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.3076923076923, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.969465648855, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=33.2, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=33.0798479087452, Blast_Score=115, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=32.0610687022901, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=33.0677290836653, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.5343511450382, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=30.188679245283, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=32.1969696969697, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17565030, Length=272, Percent_Identity=32.7205882352941, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=32.089552238806, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=32.3529411764706, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=32.183908045977, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.1115241635688, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.6513409961686, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.1023622047244, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.0751879699248, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25147288, Length=263, Percent_Identity=30.4182509505703, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=32.8125, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=32.5396825396825, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=32.8125, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=30.3501945525292, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI32563809, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=26.1306532663317, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=26.7716535433071, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=29.296875, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71982365, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17568967, Length=236, Percent_Identity=26.271186440678, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.5193798449612, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=26.6009852216749, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.7486910994764, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=30.2788844621514, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=33.1578947368421, Blast_Score=86, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=29.4416243654822, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.413612565445, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=36.3265306122449, Blast_Score=123, Evalue=9e-29, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.6693227091633, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=33.203125, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=32.6693227091633, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.4661354581673, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=30.0395256916996, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.5301204819277, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.952380952381, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=34, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=30.0578034682081, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI21356301, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.0196078431373, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581726, Length=249, Percent_Identity=25.3012048192771, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=30.9644670050761, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=30.9644670050761, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=31.3131313131313, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 25465; Mature: 25334
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTG CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCEEEEEC DVTCAADLERLVAETVKRFGGVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTV CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHCCEEEEEEHHHHHHH RGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSFSQTLAAELAPKGIRVNSVA HHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCC PGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE IVVDGGYTIG EEEECCEECC >Mature Secondary Structure TSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTG CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCEEEEEC DVTCAADLERLVAETVKRFGGVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTV CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHCCEEEEEEHHHHHHH RGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSFSQTLAAELAPKGIRVNSVA HHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCC PGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE IVVDGGYTIG EEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA