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The map label for this gene is pal [C]

Identifier: 83309701

GI number: 83309701

Start: 649108

End: 650244

Strand: Reverse

Name: pal [C]

Synonym: amb0602

Alternate gene names: 83309701

Gene position: 650244-649108 (Counterclockwise)

Preceding gene: 83309702

Following gene: 83309700

Centisome position: 13.09

GC content: 67.02

Gene sequence:

>1137_bases
ATGCTGCGGCGCGGCACCGTTACCTTGCCGGATGCCGGGGGCGAGCGTAGATATGGGGGCAGATTCACAACGCATCGCAC
CCCCACGGGAAGGTTCATAACCATGCGCAGCCTCAAGTCCCTCCTTGCCGCGGCCGTCGTCGTCGGTGCCCTGGCCCCGG
TGGCCGCACAGGCCCAGTGGTATGTCGGTCTCGACGCCGGCGCCCAGCTCCTGCAGGATTCCAAGAACAGCGGCTCCGGC
GTTTCCGGCCTCAAGTCCGAGTCCGACGTGGGCTGGCTGACCCAGGGCGTGGTCGGCTATGCGTTCGGCCAGTGGCGCGC
GGAAGGTGAACTGTCCTATCGCTCCAGCGGCGTCTCCAAGGTTGGCGGCGCCACCGGCAGCGGCGATACCTCGGCCCTGG
CGCCCATGTTCAACGGCGTCTACGAGTTCCTGCCCCAGTCCAAGTGGCATCCCTTCGTCGGCCTTGGTATCGGCGCCGCC
CGCCTGGACAACGGAACCGTCAAGAAGAACGGCGCCAACGCCTATAGCGGCGACGACTGGCAGTTCGCCTATCAGGGCTT
TGCCGGCGTGGGCTATGACCTCACCGACAATGTCGAACTGAAGGCCCAGTACCGCTATTTCTCGACCCTGGATTACGAGT
CGAAGGCCGCGTCGAACAATGCCAAGATCGATTCCGAGTATCGTGACCACGGTCTGATGCTTGGCTTCGTCTACAAGTTC
AACGCCCCCAAGGCGGCTCCGGCTCCGGCGCCCGTCCCGGTGGCTGCTCCGGCTCCCGCCCCGGCGCCCCGCGCTCCGGC
CCAGGTGCAGAAGAACTACATCGTGTTCTTCGACTTCGACAAGGCGCAGATCACCCCCGAAGCCGCCCGCGTCCTGCAGC
AGGCCGCAGGTGCCGCCAAGACCGCCGGTGCCGCCCGCATCGACCTGTCGGCCCATACCGACCTGTCGGGCAGCGCCAAG
TACAACCAGGCCCTGTCCGAGAAGCGCGGCGCCGCCGTCAAGGCGCAGCTCGAGCAGCTGGGCATCCCGGCCAGCCAGAT
CGTCGTGGTCGCCAAGGGCAAGACCTCGCCCATGGTCCCGACCCCCGATGGCGTGCGCGAGCCGCAGAACCGCCGCGTGG
AGATCATCCTGCCCTAA

Upstream 100 bases:

>100_bases
TTCCGCCGCCTGAAGGCCCAAGCCGAGTCCGCCCCTCCCGCCGAACCGGAAGCCCCCACCGCGTAACACTGTTGCTTTTC
GGCAACAGCCGCCGGAGAAC

Downstream 100 bases:

>100_bases
CCGGCGCGATCGACTGAAATCGGCAAGGGCTCGACCTCGCGGTCGGGCCCTTTTCGATTCACAAGCCCGGCGATGCCGGG
TAATAAGAGTCCAGTGGTCA

Product: Outer membrane protein and related peptidoglycan-associated protein

Products: NA

Alternate protein names: OMPC [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MLRRGTVTLPDAGGERRYGGRFTTHRTPTGRFITMRSLKSLLAAAVVVGALAPVAAQAQWYVGLDAGAQLLQDSKNSGSG
VSGLKSESDVGWLTQGVVGYAFGQWRAEGELSYRSSGVSKVGGATGSGDTSALAPMFNGVYEFLPQSKWHPFVGLGIGAA
RLDNGTVKKNGANAYSGDDWQFAYQGFAGVGYDLTDNVELKAQYRYFSTLDYESKAASNNAKIDSEYRDHGLMLGFVYKF
NAPKAAPAPAPVPVAAPAPAPAPRAPAQVQKNYIVFFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTDLSGSAK
YNQALSEKRGAAVKAQLEQLGIPASQIVVVAKGKTSPMVPTPDGVREPQNRRVEIILP

Sequences:

>Translated_378_residues
MLRRGTVTLPDAGGERRYGGRFTTHRTPTGRFITMRSLKSLLAAAVVVGALAPVAAQAQWYVGLDAGAQLLQDSKNSGSG
VSGLKSESDVGWLTQGVVGYAFGQWRAEGELSYRSSGVSKVGGATGSGDTSALAPMFNGVYEFLPQSKWHPFVGLGIGAA
RLDNGTVKKNGANAYSGDDWQFAYQGFAGVGYDLTDNVELKAQYRYFSTLDYESKAASNNAKIDSEYRDHGLMLGFVYKF
NAPKAAPAPAPVPVAAPAPAPAPRAPAQVQKNYIVFFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTDLSGSAK
YNQALSEKRGAAVKAQLEQLGIPASQIVVVAKGKTSPMVPTPDGVREPQNRRVEIILP
>Mature_378_residues
MLRRGTVTLPDAGGERRYGGRFTTHRTPTGRFITMRSLKSLLAAAVVVGALAPVAAQAQWYVGLDAGAQLLQDSKNSGSG
VSGLKSESDVGWLTQGVVGYAFGQWRAEGELSYRSSGVSKVGGATGSGDTSALAPMFNGVYEFLPQSKWHPFVGLGIGAA
RLDNGTVKKNGANAYSGDDWQFAYQGFAGVGYDLTDNVELKAQYRYFSTLDYESKAASNNAKIDSEYRDHGLMLGFVYKF
NAPKAAPAPAPVPVAAPAPAPAPRAPAQVQKNYIVFFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTDLSGSAK
YNQALSEKRGAAVKAQLEQLGIPASQIVVVAKGKTSPMVPTPDGVREPQNRRVEIILP

Specific function: Growth enhancer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=105, Percent_Identity=34.2857142857143, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 39942; Mature: 39942

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRGTVTLPDAGGERRYGGRFTTHRTPTGRFITMRSLKSLLAAAVVVGALAPVAAQAQW
CCCCCEEECCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCEE
YVGLDAGAQLLQDSKNSGSGVSGLKSESDVGWLTQGVVGYAFGQWRAEGELSYRSSGVSK
EEECHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCEECCCCEEHHHCCCHH
VGGATGSGDTSALAPMFNGVYEFLPQSKWHPFVGLGIGAARLDNGTVKKNGANAYSGDDW
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCEECCCCCCCCCCCC
QFAYQGFAGVGYDLTDNVELKAQYRYFSTLDYESKAASNNAKIDSEYRDHGLMLGFVYKF
EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCCHHHHCCEEEEEEEEE
NAPKAAPAPAPVPVAAPAPAPAPRAPAQVQKNYIVFFDFDKAQITPEAARVLQQAAGAAK
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCHHCCHHHHHHHHHHCCCHH
TAGAARIDLSAHTDLSGSAKYNQALSEKRGAAVKAQLEQLGIPASQIVVVAKGKTSPMVP
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEEECCCCCCCCC
TPDGVREPQNRRVEIILP
CCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MLRRGTVTLPDAGGERRYGGRFTTHRTPTGRFITMRSLKSLLAAAVVVGALAPVAAQAQW
CCCCCEEECCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCEE
YVGLDAGAQLLQDSKNSGSGVSGLKSESDVGWLTQGVVGYAFGQWRAEGELSYRSSGVSK
EEECHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCEECCCCEEHHHCCCHH
VGGATGSGDTSALAPMFNGVYEFLPQSKWHPFVGLGIGAARLDNGTVKKNGANAYSGDDW
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCEECCCCCCCCCCCC
QFAYQGFAGVGYDLTDNVELKAQYRYFSTLDYESKAASNNAKIDSEYRDHGLMLGFVYKF
EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCCHHHHCCEEEEEEEEE
NAPKAAPAPAPVPVAAPAPAPAPRAPAQVQKNYIVFFDFDKAQITPEAARVLQQAAGAAK
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCHHCCHHHHHHHHHHCCCHH
TAGAARIDLSAHTDLSGSAKYNQALSEKRGAAVKAQLEQLGIPASQIVVVAKGKTSPMVP
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEEECCCCCCCCC
TPDGVREPQNRRVEIILP
CCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA