| Definition | Staphylococcus aureus RF122, complete genome. |
|---|---|
| Accession | NC_007622 |
| Length | 2,742,531 |
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The map label for this gene is oppD2 [H]
Identifier: 82750971
GI number: 82750971
Start: 1350532
End: 1351305
Strand: Reverse
Name: oppD2 [H]
Synonym: SAB1235c
Alternate gene names: 82750971
Gene position: 1351305-1350532 (Counterclockwise)
Preceding gene: 82750972
Following gene: 82750970
Centisome position: 49.27
GC content: 31.65
Gene sequence:
>774_bases ATGAGTCTCATTGATATACAAAATTTAACAATAAAGAATACTAGTGAGAAATCACTTATTAAAGGGATTGATTTGAAAAT TTTTAGTCAACAGATTAATGCCTTGATTGGAGAGAGCGGCGCTGGAAAAAGTTTGATTGCTAAAGCCTTACTTGAATATT TACCATTTGATTTAACCTGCACGTATTATTCGTACCAATTTGATGGCGAAAATGTTAGTAGATTGAGTAAATATTATGGT CATACAATTGGCTATATTTCTCAAAATTATGCAGAAAGTTTTAACGACCATACTAAATTAGGTAAACAGTTAACTGCGAT TTATCGTAAGCATTATAAAAGTAGTAAAGAAGAGGCTTTGTCCAAAATTGACAAGGCTTTGTCGTGGGTTAATTTACAAA GCAAAGATATATTAAATAAATATAGCTTCCAACTTTCTGGGGGCCAACTTGAACGCGTATACATAGCAAGCGTTCTCATG TTGGAGCCTAAATTAATCATTGCAGACGAACCAGTTGCATCATTGGATGCTTTGAACGGTAATCAAGTGATGGATTTATT ACAGCATATTGTATTAGAACATGGTCAAACATTATTTATTATCACACATAACTTAAGTCATGTATTGAAATATTGTCAGT ACATTAATGTTTTAAAAGAAGGTCAAATCATTGAACAAGGCAATATTGATCATTTCAAGTATGAGCATTTGCATCCGTAT ACTGAACAGCTAATTAAATATAGAACACAATTAAAGAGGGATTACTATGATTGA
Upstream 100 bases:
>100_bases TTGATTGCACCTGCTTCAGTCATTGCTATAACTATTTTAATTTTTAATTTAACCGGTGATGCGCTAAGAGATAGATTGCT GAAACAACGAGGTGAATATG
Downstream 100 bases:
>100_bases GTTAAAACATGTAACTTTTGGTTATAATAAAAAGCAGATGGTGCTACAAGATATCAATATTACTATACCCGATGGAGAAA ATGTTGGTATTTTAGGCGAA
Product: oligopeptide transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLTCTYYSYQFDGENVSRLSKYYG HTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLM LEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYINVLKEGQIIEQGNIDHFKYEHLHPY TEQLIKYRTQLKRDYYD
Sequences:
>Translated_257_residues MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLTCTYYSYQFDGENVSRLSKYYG HTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLM LEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYINVLKEGQIIEQGNIDHFKYEHLHPY TEQLIKYRTQLKRDYYD >Mature_256_residues SLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLTCTYYSYQFDGENVSRLSKYYGH TIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLML EPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYINVLKEGQIIEQGNIDHFKYEHLHPYT EQLIKYRTQLKRDYYD
Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=219, Percent_Identity=27.8538812785388, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI42741659, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=26.5217391304348, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI9955963, Length=231, Percent_Identity=25.1082251082251, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=220, Percent_Identity=27.7272727272727, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961252, Length=218, Percent_Identity=27.0642201834862, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9961250, Length=218, Percent_Identity=27.0642201834862, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4505771, Length=218, Percent_Identity=27.0642201834862, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9955968, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI9955966, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI45243524, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787759, Length=255, Percent_Identity=30.1960784313725, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=32.9411764705882, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=29.1666666666667, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789890, Length=246, Percent_Identity=29.2682926829268, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=28.6792452830189, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=29.3436293436293, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=9e-27, Organism=Escherichia coli, GI1789963, Length=263, Percent_Identity=26.9961977186312, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1789962, Length=247, Percent_Identity=29.5546558704453, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1788225, Length=252, Percent_Identity=28.1746031746032, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790544, Length=251, Percent_Identity=28.6852589641434, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=233, Percent_Identity=29.1845493562232, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=27.1966527196653, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=29.6296296296296, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=28.4518828451883, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=256, Percent_Identity=28.125, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48994997, Length=253, Percent_Identity=25.6916996047431, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786803, Length=218, Percent_Identity=29.3577981651376, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=24.2424242424242, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788450, Length=197, Percent_Identity=25.8883248730964, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790162, Length=243, Percent_Identity=26.3374485596708, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787112, Length=236, Percent_Identity=29.2372881355932, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=28.7081339712919, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=26.0683760683761, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=27.5109170305677, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=26.7942583732057, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787029, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=29.2237442922374, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789032, Length=222, Percent_Identity=26.1261261261261, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788644, Length=132, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=24.8945147679325, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787113, Length=236, Percent_Identity=28.3898305084746, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=25.5506607929515, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787712, Length=228, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=27.6497695852535, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=26.2910798122066, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=27.6315789473684, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=213, Percent_Identity=25.8215962441315, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=22.4669603524229, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789593, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=24.2290748898678, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=26.3888888888889, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71996809, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI115534520, Length=271, Percent_Identity=25.0922509225092, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI115533592, Length=218, Percent_Identity=28.8990825688073, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71992285, Length=234, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=231, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI25146777, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=220, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567269, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=26.5486725663717, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=222, Percent_Identity=26.1261261261261, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324498, Length=232, Percent_Identity=26.2931034482759, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=219, Percent_Identity=25.5707762557078, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI23397593, Length=238, Percent_Identity=27.3109243697479, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24641565, Length=227, Percent_Identity=28.1938325991189, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136662, Length=237, Percent_Identity=24.4725738396624, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI85726357, Length=227, Percent_Identity=25.9911894273128, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI85724858, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85724856, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580547, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580551, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580549, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580545, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574744, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=231, Percent_Identity=24.2424242424242, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650855, Length=216, Percent_Identity=25, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24650853, Length=216, Percent_Identity=25, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29551; Mature: 29420
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLTC CCCEECCCCEECCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE TYYSYQFDGENVSRLSKYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEAL EEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG HHHHHHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHHCCCC NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYINVLKEGQIIEQGNIDHFKYEHLHPY HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCCCEEHHHCCHH TEQLIKYRTQLKRDYYD HHHHHHHHHHHHHCCCC >Mature Secondary Structure SLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLTC CCEECCCCEECCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE TYYSYQFDGENVSRLSKYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEAL EEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG HHHHHHHHHHCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHHCCCC NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYINVLKEGQIIEQGNIDHFKYEHLHPY HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCCCEEHHHCCHH TEQLIKYRTQLKRDYYD HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA