Definition Staphylococcus aureus RF122, complete genome.
Accession NC_007622
Length 2,742,531

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The map label for this gene is oppF2 [H]

Identifier: 82750970

GI number: 82750970

Start: 1349838

End: 1350539

Strand: Reverse

Name: oppF2 [H]

Synonym: SAB1234c

Alternate gene names: 82750970

Gene position: 1350539-1349838 (Counterclockwise)

Preceding gene: 82750971

Following gene: 82750969

Centisome position: 49.24

GC content: 32.91

Gene sequence:

>702_bases
ATGATTGAGTTAAAACATGTAACTTTTGGTTATAATAAAAAGCAGATGGTGCTACAAGATATCAATATTACTATACCCGA
TGGAGAAAATGTTGGTATTTTAGGCGAAAGTGGCTGTGGTAAAAGTACGCTCGCTTCATTGGTTCTTGGCTTATTTAAAC
CTGTTAAAGGAGAAATTTACTTAAGTGACAATGCAGTGTTACCGATTTTCCAACACCCTTTAACTAGCTTTAACCCTGAT
TGGACGATTGAGACCTCATTAAAAGAAGCGTTATATTATTACAGAGGCCTAACTGATAATACTGCTCAGGATCAATTATT
AATACAACATTTATCTACTTTTGAGTTGAACGCGCAATTATTGACTAAATTACCAAGCGAAGTGAGTGGCGGAGAATTAC
AAAGATTTAATGTCATGCGTTCGTTATTAGCACAGCCTCGCGTTTTAATATGTGATGAGATAACTTCAAATTTAGATGTT
ATAGCTGAACAAAATGTAATCAATATATTAAAAGCGCAAACGATTACGAACTTAAATCATTTTATCGTTATTTCTCATGA
TTTATCCGTGTTACAACGCTTAGTCAATAGAATTATCGTTCTTAAGGATGGCATGATAGTCGATGATTTTACAATAGAGG
AATTATTTAATGTTGATAGACACTCTTATACAAAAGAATTAGTGCAAGCATTTTCATATTAG

Upstream 100 bases:

>100_bases
ATCATTGAACAAGGCAATATTGATCATTTCAAGTATGAGCATTTGCATCCGTATACTGAACAGCTAATTAAATATAGAAC
ACAATTAAAGAGGGATTACT

Downstream 100 bases:

>100_bases
TTATTTAAGAATGCGATAATTCTAGACTTGTTATAAAATATATATAAATCAAGTATATTAATCTAGACACTTATCGATTT
TATTTTCTATATTTAAAAAT

Product: oligopeptide transporter ATPase

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD
WTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQLLTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDV
IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFTIEELFNVDRHSYTKELVQAFSY

Sequences:

>Translated_233_residues
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD
WTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQLLTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDV
IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFTIEELFNVDRHSYTKELVQAFSY
>Mature_233_residues
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIFQHPLTSFNPD
WTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQLLTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDV
IAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFTIEELFNVDRHSYTKELVQAFSY

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process [H]

COG id: COG4608

COG function: function code E; ABC-type oligopeptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=255, Percent_Identity=27.843137254902, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI42490749, Length=237, Percent_Identity=27.8481012658228, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI156105685, Length=239, Percent_Identity=28.8702928870293, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI9961252, Length=242, Percent_Identity=29.7520661157025, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI4505771, Length=242, Percent_Identity=29.7520661157025, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI9961250, Length=242, Percent_Identity=29.7520661157025, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI42741659, Length=241, Percent_Identity=28.6307053941909, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI27436953, Length=225, Percent_Identity=25.7777777777778, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=25.1162790697674, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI153792144, Length=236, Percent_Identity=25, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI66529005, Length=229, Percent_Identity=24.8908296943231, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=32.2727272727273, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787758, Length=240, Percent_Identity=30.8333333333333, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=32.4200913242009, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788506, Length=255, Percent_Identity=30.9803921568627, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1789890, Length=245, Percent_Identity=29.7959183673469, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=29.6296296296296, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787759, Length=253, Percent_Identity=26.8774703557312, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693107, Length=254, Percent_Identity=26.3779527559055, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789963, Length=235, Percent_Identity=30.2127659574468, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=28.448275862069, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=26.0683760683761, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=28.0851063829787, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786398, Length=249, Percent_Identity=25.3012048192771, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=28.3720930232558, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87081791, Length=243, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=27.6785714285714, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=26.5560165975104, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=30.9012875536481, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=28.2407407407407, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787112, Length=237, Percent_Identity=27.8481012658228, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=26.7543859649123, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787548, Length=236, Percent_Identity=24.5762711864407, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787089, Length=248, Percent_Identity=25.4032258064516, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788225, Length=251, Percent_Identity=25.0996015936255, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=28.6995515695067, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=27.4418604651163, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786654, Length=227, Percent_Identity=28.6343612334802, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787712, Length=243, Percent_Identity=27.5720164609054, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=25.6198347107438, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789751, Length=228, Percent_Identity=26.7543859649123, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=27.1186440677966, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=26.6968325791855, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786698, Length=155, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786872, Length=242, Percent_Identity=28.9256198347107, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=27.9166666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786803, Length=230, Percent_Identity=24.7826086956522, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787182, Length=204, Percent_Identity=24.0196078431373, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=26.605504587156, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787041, Length=209, Percent_Identity=25.3588516746411, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=27.6995305164319, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367384, Length=234, Percent_Identity=26.9230769230769, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=24.3119266055046, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788644, Length=165, Percent_Identity=27.8787878787879, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI193211017, Length=242, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193211015, Length=242, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=28.5106382978723, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71996809, Length=242, Percent_Identity=30.9917355371901, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI115534520, Length=237, Percent_Identity=25.7383966244726, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17567265, Length=237, Percent_Identity=29.1139240506329, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193202349, Length=239, Percent_Identity=29.7071129707113, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115533592, Length=260, Percent_Identity=27.3076923076923, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17569145, Length=232, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=243, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535101, Length=250, Percent_Identity=29.2, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551700, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551702, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17511077, Length=255, Percent_Identity=27.4509803921569, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17569143, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565938, Length=242, Percent_Identity=29.7520661157025, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17543740, Length=231, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=255, Percent_Identity=27.843137254902, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=244, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=228, Percent_Identity=28.0701754385965, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=231, Percent_Identity=31.6017316017316, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71996550, Length=233, Percent_Identity=25.7510729613734, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=248, Percent_Identity=24.1935483870968, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=244, Percent_Identity=27.8688524590164, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=235, Percent_Identity=29.7872340425532, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321121, Length=215, Percent_Identity=27.4418604651163, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323959, Length=230, Percent_Identity=29.1304347826087, Blast_Score=82, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6322640, Length=244, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6320339, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641565, Length=243, Percent_Identity=31.6872427983539, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI85726357, Length=247, Percent_Identity=28.3400809716599, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397593, Length=253, Percent_Identity=29.6442687747036, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357907, Length=225, Percent_Identity=29.7777777777778, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17136662, Length=243, Percent_Identity=27.1604938271605, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24653245, Length=255, Percent_Identity=28.2352941176471, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281363262, Length=255, Percent_Identity=28.2352941176471, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=25.7009345794392, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=25.7009345794392, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24659289, Length=232, Percent_Identity=28.8793103448276, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45551501, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45551502, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21357851, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI85725262, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26279; Mature: 26279

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
CEEEEEEEECCCCCCEEEEECEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQL
ECCCEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
LTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCE
FIVISHDLSVLQRLVNRIIVLKDGMIVDDFTIEELFNVDRHSYTKELVQAFSY
EEEEECCHHHHHHHHHHHEEEECCEEEECCCHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
CEEEEEEEECCCCCCEEEEECEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQL
ECCCEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
LTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCE
FIVISHDLSVLQRLVNRIIVLKDGMIVDDFTIEELFNVDRHSYTKELVQAFSY
EEEEECCHHHHHHHHHHHEEEECCEEEECCCHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA