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The map label for this gene is rnfB [H]

Identifier: 82703818

GI number: 82703818

Start: 3107768

End: 3108547

Strand: Reverse

Name: rnfB [H]

Synonym: Nmul_A2705

Alternate gene names: 82703818

Gene position: 3108547-3107768 (Counterclockwise)

Preceding gene: 82703819

Following gene: 82703817

Centisome position: 97.62

GC content: 55.0

Gene sequence:

>780_bases
ATGAAAGATATTTCTCTGGCAGAGAAAATTGATGCCATTCTTCCGCAAACCCAATGCCGCCAGTGCGGGTTTTCGGGTTG
CAGGCCTTACGCCGAAGCAATTGCAGAGAGGCGGGCACAGATCAATCAATGTCCCCCGGGTGGAGAAGACGGCATCCATC
AACTGGCCCGACTGCTGGGGGTGGAACCCCTTCCTTTGAATACAGCCCACGGCGTGTTCAAAACGAAAGAGGTGGCATTG
ATTGATGAGCAAGCGTGCATAGGTTGTACCGTGTGCATACAGGTCTGCCCGGTGGATGCAATTGTGGGGGCGGCGAGACA
AATGCATACGGTTATTTCCGGGGAGTGCACCGGCTGCTCGTTATGCCTGGAACCCTGCCCGGTAGACTGTATCCAGATGG
TTCTTCCGAAGGAGCATTCTCCGTGTGCAGAGATCGGCGCCCAAATTGCGTGGACTGAACCGGACCATCAAGACTTCGCA
GTGGAGAAGGTGGAAAGGGTGGAAAAAAAGAAAGCAGCCGACCGTGCCCGTATGCGCTACCAGTTGCGGTTGCAGCGGCT
GGAACGCGAGAAACAGGGAAGGGAGGAAAGGCTGGCAAAAAGAACCGAAAGAACCGAAGTAACAGCCGGCATGACGCCTT
CATCATCCGCGGCCAGTCTGAAAAAAGTCACCATTCAGGCAGCGCTGGAGCGCGCAAGGGTTGCCAAGGCACAGCCATCG
CCTGGAATATCAAAAAAGGAGGACTGGAGTGACAGAACGTCAGACATTTCTTCCCGCTGA

Upstream 100 bases:

>100_bases
TATACAGCGGCCTCGTTTATCGCGGTCCTCATCTCGTGGGTGAGATTGCACAGGTGTTGTGCAATGCAAATGGGGGGGGC
CTCGATGGTGCCAGTTCAAC

Downstream 100 bases:

>100_bases
TTCATGAATTCAAGCATACGCCGTGAGATTTTTACCCGCTTCAGGGCCGCCAATCCTCATCCTACCACTGAGCTGGAGTA
CAACTCCCCCTTTGAACTGC

Product: RnfABCDGE type electron transport complex subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKDISLAEKIDAILPQTQCRQCGFSGCRPYAEAIAERRAQINQCPPGGEDGIHQLARLLGVEPLPLNTAHGVFKTKEVAL
IDEQACIGCTVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQMVLPKEHSPCAEIGAQIAWTEPDHQDFA
VEKVERVEKKKAADRARMRYQLRLQRLEREKQGREERLAKRTERTEVTAGMTPSSSAASLKKVTIQAALERARVAKAQPS
PGISKKEDWSDRTSDISSR

Sequences:

>Translated_259_residues
MKDISLAEKIDAILPQTQCRQCGFSGCRPYAEAIAERRAQINQCPPGGEDGIHQLARLLGVEPLPLNTAHGVFKTKEVAL
IDEQACIGCTVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQMVLPKEHSPCAEIGAQIAWTEPDHQDFA
VEKVERVEKKKAADRARMRYQLRLQRLEREKQGREERLAKRTERTEVTAGMTPSSSAASLKKVTIQAALERARVAKAQPS
PGISKKEDWSDRTSDISSR
>Mature_259_residues
MKDISLAEKIDAILPQTQCRQCGFSGCRPYAEAIAERRAQINQCPPGGEDGIHQLARLLGVEPLPLNTAHGVFKTKEVAL
IDEQACIGCTVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQMVLPKEHSPCAEIGAQIAWTEPDHQDFA
VEKVERVEKKKAADRARMRYQLRLQRLEREKQGREERLAKRTERTEVTAGMTPSSSAASLKKVTIQAALERARVAKAQPS
PGISKKEDWSDRTSDISSR

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=134, Percent_Identity=58.2089552238806, Blast_Score=159, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 28460; Mature: 28460

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDISLAEKIDAILPQTQCRQCGFSGCRPYAEAIAERRAQINQCPPGGEDGIHQLARLLG
CCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
VEPLPLNTAHGVFKTKEVALIDEQACIGCTVCIQVCPVDAIVGAARQMHTVISGECTGCS
CCCCCCCCCCCCHHCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
LCLEPCPVDCIQMVLPKEHSPCAEIGAQIAWTEPDHQDFAVEKVERVEKKKAADRARMRY
HCCCCCCHHHHHHHCCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLRLQRLEREKQGREERLAKRTERTEVTAGMTPSSSAASLKKVTIQAALERARVAKAQPS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PGISKKEDWSDRTSDISSR
CCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MKDISLAEKIDAILPQTQCRQCGFSGCRPYAEAIAERRAQINQCPPGGEDGIHQLARLLG
CCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
VEPLPLNTAHGVFKTKEVALIDEQACIGCTVCIQVCPVDAIVGAARQMHTVISGECTGCS
CCCCCCCCCCCCHHCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
LCLEPCPVDCIQMVLPKEHSPCAEIGAQIAWTEPDHQDFAVEKVERVEKKKAADRARMRY
HCCCCCCHHHHHHHCCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLRLQRLEREKQGREERLAKRTERTEVTAGMTPSSSAASLKKVTIQAALERARVAKAQPS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PGISKKEDWSDRTSDISSR
CCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA