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The map label for this gene is ycbY [C]

Identifier: 82702161

GI number: 82702161

Start: 1193419

End: 1194618

Strand: Direct

Name: ycbY [C]

Synonym: Nmul_A1032

Alternate gene names: 82702161

Gene position: 1193419-1194618 (Clockwise)

Preceding gene: 82702160

Following gene: 82702162

Centisome position: 37.48

GC content: 54.67

Gene sequence:

>1200_bases
GTGACGCTTCATCATTTTTTTGCTCCCTGTCCCCGTGGCGTGGAATCCGGGCTCGTTGCCGAGTTGGAGTGCCTCGGTGC
TTCTGCCATAAATCCTCAGGATGGGGGCGTGGAATTTCAGGGGGATTGGGATACGTGCTATCGAACCAATCTGGAAAGCC
GTATCGCCAGCCGCATTCTCTGGCGCGTTGCAAGCGAACCTTACGCTACCGAAATTGACGTATATAAAGTTGCGCGCCAG
TTACCCTGGCACGATTGGTTCTCTCCGGCGCTTACAATCAAGGTCAACGTGGCTGCCATCAGGTGTCCGTTGCAGAGCCT
GGATTTCGTTACGCTCAAGATCAAGGATGGAGTCTGCGACAGGTTCCGCGAAGTTGCCGGCAACCGGCCGAGTGTCGATA
CCGTGCAACCTGACATCCGGATTCACGGCTTTCTCGATGCCCGCAGGATTTCCTTGTATCTGGACACCTCCGGTGACGCG
TTATTCAAGCGTGGCCTGCGAAAGAATACCGGGGAGGCTCCCCTCCGGGAAAATCTTGCTGCAGGAATTTTATCGCTGGC
AGACTGGCGCCCGGGAATTCCGCTGCTTGATCCCATGTGCGGGAGCGGAACCTTTCTGCTGGAAGCGGCACAAATTGCCC
TGAATATACCCCCAGGGCTGGGACGAAGTTTTGCTTTCGAAAAGCTCAGGATATTCGACAAAAAACGATGGGAGCAGATC
AGAAAGGCGGCAATTGCAGGGCAGAAGACGAAATCTCAGCAACCGATATTTGGCAGCGATTTGTATGGCAATGCGATTGC
TGTGGCCCAGGCCAATCTCTCCGCTGCCGGACTTTCTGAAGCAGTTACTCTCAAGCAGGCGAACGTGCTGGAATTGTCCG
CTCCGGCATCTTCCGGCTTTCTTGTCACCAACCCCCCCTACGGGGTGAGATTGGGGGAGCAGAAACAGCTCATGGAGTTT
TATCCGAAACTCGGCGACGTGCTTAAGAAGAAATTCAGCGGGTGGAATGCCTACATCTTGACTGCTGATCCACAGCTTCC
CAAGCTCATACGTCTGACAGCCTCGCGTCGTATTCCGCTCTTCAACGGTGCGCTGGAGTGCCGCTTACTGGAATATAAAA
TTGTATCGGGCGGGATGCGCAAAACGAAAAAAACCGCCACCGGTGAGCCAGGACGAGTAACGGGAGCCGAGCATGAGTAA

Upstream 100 bases:

>100_bases
GCTTGCCTACGGCTCGTGGACAGCAAGATAAACCCATTTTTGCGAGTATCCGGGGATCAGGTTCCCCTGATATCGTGACC
CGCCTGCATTCTGTCATCCT

Downstream 100 bases:

>100_bases
CCCCATGAGGCCGGTACGAAGCATATTGCTGGCGATCTTCACCGGTTGCGCGGGCCTGATCGGCTACGCGCTTTATCTGC
AACTCGTGGAAAATCTTTTG

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTLHHFFAPCPRGVESGLVAELECLGASAINPQDGGVEFQGDWDTCYRTNLESRIASRILWRVASEPYATEIDVYKVARQ
LPWHDWFSPALTIKVNVAAIRCPLQSLDFVTLKIKDGVCDRFREVAGNRPSVDTVQPDIRIHGFLDARRISLYLDTSGDA
LFKRGLRKNTGEAPLRENLAAGILSLADWRPGIPLLDPMCGSGTFLLEAAQIALNIPPGLGRSFAFEKLRIFDKKRWEQI
RKAAIAGQKTKSQQPIFGSDLYGNAIAVAQANLSAAGLSEAVTLKQANVLELSAPASSGFLVTNPPYGVRLGEQKQLMEF
YPKLGDVLKKKFSGWNAYILTADPQLPKLIRLTASRRIPLFNGALECRLLEYKIVSGGMRKTKKTATGEPGRVTGAEHE

Sequences:

>Translated_399_residues
MTLHHFFAPCPRGVESGLVAELECLGASAINPQDGGVEFQGDWDTCYRTNLESRIASRILWRVASEPYATEIDVYKVARQ
LPWHDWFSPALTIKVNVAAIRCPLQSLDFVTLKIKDGVCDRFREVAGNRPSVDTVQPDIRIHGFLDARRISLYLDTSGDA
LFKRGLRKNTGEAPLRENLAAGILSLADWRPGIPLLDPMCGSGTFLLEAAQIALNIPPGLGRSFAFEKLRIFDKKRWEQI
RKAAIAGQKTKSQQPIFGSDLYGNAIAVAQANLSAAGLSEAVTLKQANVLELSAPASSGFLVTNPPYGVRLGEQKQLMEF
YPKLGDVLKKKFSGWNAYILTADPQLPKLIRLTASRRIPLFNGALECRLLEYKIVSGGMRKTKKTATGEPGRVTGAEHE
>Mature_398_residues
TLHHFFAPCPRGVESGLVAELECLGASAINPQDGGVEFQGDWDTCYRTNLESRIASRILWRVASEPYATEIDVYKVARQL
PWHDWFSPALTIKVNVAAIRCPLQSLDFVTLKIKDGVCDRFREVAGNRPSVDTVQPDIRIHGFLDARRISLYLDTSGDAL
FKRGLRKNTGEAPLRENLAAGILSLADWRPGIPLLDPMCGSGTFLLEAAQIALNIPPGLGRSFAFEKLRIFDKKRWEQIR
KAAIAGQKTKSQQPIFGSDLYGNAIAVAQANLSAAGLSEAVTLKQANVLELSAPASSGFLVTNPPYGVRLGEQKQLMEFY
PKLGDVLKKKFSGWNAYILTADPQLPKLIRLTASRRIPLFNGALECRLLEYKIVSGGMRKTKKTATGEPGRVTGAEHE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=379, Percent_Identity=34.3007915567282, Blast_Score=222, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43920; Mature: 43789

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHHFFAPCPRGVESGLVAELECLGASAINPQDGGVEFQGDWDTCYRTNLESRIASRIL
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHHHH
WRVASEPYATEIDVYKVARQLPWHDWFSPALTIKVNVAAIRCPLQSLDFVTLKIKDGVCD
HHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCHHH
RFREVAGNRPSVDTVQPDIRIHGFLDARRISLYLDTSGDALFKRGLRKNTGEAPLRENLA
HHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHH
AGILSLADWRPGIPLLDPMCGSGTFLLEAAQIALNIPPGLGRSFAFEKLRIFDKKRWEQI
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
RKAAIAGQKTKSQQPIFGSDLYGNAIAVAQANLSAAGLSEAVTLKQANVLELSAPASSGF
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCHHHEEECCCCEEEEECCCCCCE
LVTNPPYGVRLGEQKQLMEFYPKLGDVLKKKFSGWNAYILTADPQLPKLIRLTASRRIPL
EEECCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCE
FNGALECRLLEYKIVSGGMRKTKKTATGEPGRVTGAEHE
ECCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLHHFFAPCPRGVESGLVAELECLGASAINPQDGGVEFQGDWDTCYRTNLESRIASRIL
CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHHHH
WRVASEPYATEIDVYKVARQLPWHDWFSPALTIKVNVAAIRCPLQSLDFVTLKIKDGVCD
HHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEECCCHHH
RFREVAGNRPSVDTVQPDIRIHGFLDARRISLYLDTSGDALFKRGLRKNTGEAPLRENLA
HHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHH
AGILSLADWRPGIPLLDPMCGSGTFLLEAAQIALNIPPGLGRSFAFEKLRIFDKKRWEQI
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
RKAAIAGQKTKSQQPIFGSDLYGNAIAVAQANLSAAGLSEAVTLKQANVLELSAPASSGF
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCHHHEEECCCCEEEEECCCCCCE
LVTNPPYGVRLGEQKQLMEFYPKLGDVLKKKFSGWNAYILTADPQLPKLIRLTASRRIPL
EEECCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCE
FNGALECRLLEYKIVSGGMRKTKKTATGEPGRVTGAEHE
ECCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]