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The map label for this gene is tdcF [C]

Identifier: 82702014

GI number: 82702014

Start: 1006684

End: 1007073

Strand: Reverse

Name: tdcF [C]

Synonym: Nmul_A0885

Alternate gene names: 82702014

Gene position: 1007073-1006684 (Counterclockwise)

Preceding gene: 82702016

Following gene: 82702013

Centisome position: 31.63

GC content: 56.67

Gene sequence:

>390_bases
ATGGAAAAAAAGACGATACATACAACGGATGCGCCGCAGGCTATCGGCACTTATTCCCAGGGAATACGCGTCAGCGGGGG
CGATACGGTCTACATTTCCGGTCAGATCGGTCTCGAACCCTCTACCATGCAGATGGTGGAAGGCATCGAGAATCAAATCC
ATCGGGTATTCCAGAACCTGACGGCGGTTGCAGCGGCCGGCGGGGGCAGCCTCAGGGATATCGTCAAATTGAACGTCTAT
CTCACGGACCTTTCCAATTTCCAGAAGGTGAATGAAATCATGGTGCAATATTTCAGCACGCCCTACCCTGCGCGCGCTGC
CATCGGGGTATCCGCGCTCCCGCGGAACGCACTGGTGGAGATCGATGCGGTGCTGGTGGTGCCCGCGTGA

Upstream 100 bases:

>100_bases
GAAATGTGCTGAGGTTCCCGTCATCATATCGCAAACACGATACCCGTAGTTTCAAATTTCGGCTTATTATGTCAACGTAT
TATCAACCAAAGGAGACAAG

Downstream 100 bases:

>100_bases
GGACTGAGGGGTGATACAGGAACCCGCGCGCTAGTCCAAAGGATGCATTTCCACGACGGATGCAGTCGCTCGCCACCTCT
CCCATCAGCGGGACAATCAG

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MEKKTIHTTDAPQAIGTYSQGIRVSGGDTVYISGQIGLEPSTMQMVEGIENQIHRVFQNLTAVAAAGGGSLRDIVKLNVY
LTDLSNFQKVNEIMVQYFSTPYPARAAIGVSALPRNALVEIDAVLVVPA

Sequences:

>Translated_129_residues
MEKKTIHTTDAPQAIGTYSQGIRVSGGDTVYISGQIGLEPSTMQMVEGIENQIHRVFQNLTAVAAAGGGSLRDIVKLNVY
LTDLSNFQKVNEIMVQYFSTPYPARAAIGVSALPRNALVEIDAVLVVPA
>Mature_129_residues
MEKKTIHTTDAPQAIGTYSQGIRVSGGDTVYISGQIGLEPSTMQMVEGIENQIHRVFQNLTAVAAAGGGSLRDIVKLNVY
LTDLSNFQKVNEIMVQYFSTPYPARAAIGVSALPRNALVEIDAVLVVPA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=42.4, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=37.7952755905512, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=35.7142857142857, Blast_Score=82, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=45.1612903225806, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=45.1612903225806, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=45.1612903225806, Blast_Score=116, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=36.3636363636364, Blast_Score=90, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=35.3535353535354, Blast_Score=74, Evalue=9e-15,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=36.5853658536585, Blast_Score=87, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13820; Mature: 13820

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKTIHTTDAPQAIGTYSQGIRVSGGDTVYISGQIGLEPSTMQMVEGIENQIHRVFQNL
CCCCEECCCCCCHHHHHCCCCEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
TAVAAAGGGSLRDIVKLNVYLTDLSNFQKVNEIMVQYFSTPYPARAAIGVSALPRNALVE
HHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEE
IDAVLVVPA
EEEEEEECC
>Mature Secondary Structure
MEKKTIHTTDAPQAIGTYSQGIRVSGGDTVYISGQIGLEPSTMQMVEGIENQIHRVFQNL
CCCCEECCCCCCHHHHHCCCCEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
TAVAAAGGGSLRDIVKLNVYLTDLSNFQKVNEIMVQYFSTPYPARAAIGVSALPRNALVE
HHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEE
IDAVLVVPA
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]