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The map label for this gene is rpoZ

Identifier: 82701186

GI number: 82701186

Start: 58820

End: 59026

Strand: Reverse

Name: rpoZ

Synonym: Nmul_A0051

Alternate gene names: 82701186

Gene position: 59026-58820 (Counterclockwise)

Preceding gene: 82701187

Following gene: 82701185

Centisome position: 1.85

GC content: 54.59

Gene sequence:

>207_bases
ATGGCACGCATCACTGTTGACGACTGTCTGAAAAAAATTCCCAATCGCTTCGATATGACCCTCGTTGCAACCATTCGGGC
GCGCCAACTTTCAGTGGGCGGAAGCCCGATGGTGGAACCGGCGCGGGATAAACCGACCGTGATTGCGCTGCGGGAAATTT
CACAAGGCCTGGTTGGAACGGATATCCTCACGACTGGCCCAATTTAG

Upstream 100 bases:

>100_bases
TTTGTCGTGTAAAATGAAGTGCTTGAAATGCCCTCCGGGTTGCCTTTCCACAACCAGACACTCTATACTGTAATTTCCTT
ATATCCTGGTAAAGGAAATC

Downstream 100 bases:

>100_bases
GTGTTCAAGTGCTACCGGTAAGGAAAAAAACCGGTTTCATCGCGTAACAAGTAGACTGACGATCAATCATCAAGTGAGGA
TACCGCTGCCATTCCGGAAC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGTDILTTGPI

Sequences:

>Translated_68_residues
MARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGTDILTTGPI
>Mature_67_residues
ARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGTDILTTGPI

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=59.375, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_NITMU (Q2YD11)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_410752.1
- STRING:   Q2YD11
- GeneID:   3786394
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A0051
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- PhylomeDB:   Q2YD11
- ProtClustDB:   PRK00392
- BioCyc:   NMUL323848:NMUL_A0051-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7349; Mature: 7218

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGT
CCEECHHHHHHHCCCCCCEEEEEEEEHEEECCCCCCCCCCCCCCCEEEEHHHHHCCCCCC
DILTTGPI
CCEECCCC
>Mature Secondary Structure 
ARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGT
CEECHHHHHHHCCCCCCEEEEEEEEHEEECCCCCCCCCCCCCCCEEEEHHHHHCCCCCC
DILTTGPI
CCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA