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The map label for this gene is yraJ [H]

Identifier: 82545617

GI number: 82545617

Start: 3245051

End: 3247384

Strand: Reverse

Name: yraJ [H]

Synonym: SBO_3240

Alternate gene names: 82545617

Gene position: 3247384-3245051 (Counterclockwise)

Preceding gene: 82545621

Following gene: 82545613

Centisome position: 71.85

GC content: 47.6

Gene sequence:

>2334_bases
GTGGGCACCTACGTTACCAATACAGGCTTAATGGCTACATACGGCGGTCAGTTTACGCTTACGAATAAAAAGAAGGTTTC
ACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGG
GTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCC
GGTACAGCTGCTGAATTTGATTTCAATCATCAGCGACTTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATGCAAG
AGGTTACGTCTCCCCTTCTCGTTGGGACGATGGTATACCAACGCTGTTTACCAACTACTCGTTTACAGGTTCTGATAACC
GTTACCGCCAGGGCAATCGTAGCCAACGACAGTACCTGAATATGCAAAATGGTGCTAATTTTGGCCCCTGGCGATTACGT
AACTATTCTACGTGGACACGCAACGATCAGGCGTCAAGCTGGAACACTATCAGTAGTTATTTACAACGTGATATCAAGGC
GTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAAC
TCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCA
ATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGCCAGCGGGTGCCTTTGAAATTAACGATCTCTA
CCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATT
CTTCATTACCCATGATGCAGCGACCTAGGCATCTAAAATATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGT
GATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCT
CGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACTGGGCGCGTTGTCGATGGATATCA
ACAGAGCTGACACCCAATTCGATAACCAGCACTCTTTTCATGGCTATCAATGGCGTACGCAGTACATCAAAGATATCCCG
GAAACCAACACCAATATCGCTGTTAGCTACTATCGCTATACCAACGATGGCTATTTTAGTTTTGATGAAGCCAATACCCG
CAATTGGGACTATAACAGTCGCCAAAAAAGTGAAATTCAATTCAACATCAGCCAGACAATATTTGATGGGGTAAGTCTGT
ATGCCTCCGGTTCGCAGCAAGACTATTGGGGCAATAACGAGAAAAACAGGAATATCTCTGTTGGGGTTTCCGGCCAGCAA
TGGGGAATTGGTTACAGCCTGAATTATCAATACAGCCGCTACACTGATGAAAATAATGACCGTGCACTCTCTTTGAATCT
CAGTATTCCGTTAGAACGCTGGTTACCGCGTAGCCGGGTTTCCTATCAGATGACCAGCCAGAAAGATCGCCCAACCCAAC
ATGAAATGCGTCTTGATGGCTCACTGCTGGATGATGGTCGCCTGAGCTATAGCCTGGAACAAAGTCTGGATGACGATAAC
AACCATAACAGTAGCCTGAACGCCAGTTACCGTTCACCTTATGGAACCTTCAGTGCCGGATACAGTTACGGTAATGACAG
CAGCCAATACAATTACGGCGTTACCGGCGGCGTGGTTATCCATCCTCATGGCGTGACGCTCTCGCAATATCTGGGCAACG
CTTTTGCGCTTATCGATGCTAACGGGGCTTCTGGCGTGAGGATACAAAACTATCCGGGGATTGCTACTGATCCCTTTGGC
TATGCAGTGATTCCTTATCTCACGACTTATCAGGAAAACCGTCTCTCGGTAGATACTACGCAGCTGCCCGATAACGTCGA
TCTTGAACAAACAACACAGTTTGTGGTGCCCAACAGAGGTGCAATGGTAGCGGCGCGTTTCAACGCCAATATCGGTTATC
GCGTACTTGTTACAGTCAGCGATCGCAACGGTAAACCGTTGCCCTTTGGCGCTCTTGCCAGCAACGATGATACGGGGCAA
CAAAGTATCGTCGATGAGGGCGGCATACTATATCTCTCTGGGATATCGAGTAAATCACAAAGCTGGACTGTACGCTGGGG
AAATCAGGCAGATCAACAATGTCAGTTTGCTTTTAATACACCGGATTCAGAACCAACAACCTCTGTATTACAAGGCACAG
CGCAGTGCCATTAA

Upstream 100 bases:

>100_bases
CCAGTTTACCCATTTGAAGTTTAAACTCATTTGAAAATGATCTGCGGGGTTCTGCAGATAATGCTTTCTGTTCCATAACA
GGTGTCCACTAGTTGAAAAG

Downstream 100 bases:

>100_bases
GGATAAAAAAATGAAAAGAGCGCCTCTTATAACAGGACTTTTGTTGATATCCACATCCTGCGCTTATGCCTCCTCAGGAG
GGTGTGGAGCCGACAGCACT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 776

Protein sequence:

>777_residues
MGTYVTNTGLMATYGGQFTLTNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIP
GTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLR
NYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPRHLKYSATAGRYRADANS
DSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIP
ETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQ
WGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDN
NHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFG
YAVIPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQ
QSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEPTTSVLQGTAQCH

Sequences:

>Translated_777_residues
MGTYVTNTGLMATYGGQFTLTNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIP
GTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLR
NYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPRHLKYSATAGRYRADANS
DSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIP
ETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQ
WGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDN
NHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFG
YAVIPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQ
QSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEPTTSVLQGTAQCH
>Mature_776_residues
GTYVTNTGLMATYGGQFTLTNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPG
TAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRN
YSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAI
VTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPRHLKYSATAGRYRADANSD
SKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPE
TNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQW
GIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNN
HNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGY
AVIPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQ
SIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEPTTSVLQGTAQCH

Specific function: Could be involved in the export and assembly of the putative yraH fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=756, Percent_Identity=98.6772486772487, Blast_Score=1534, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=801, Percent_Identity=38.3270911360799, Blast_Score=529, Evalue=1e-151,
Organism=Escherichia coli, GI1787172, Length=799, Percent_Identity=38.9236545682103, Blast_Score=526, Evalue=1e-150,
Organism=Escherichia coli, GI1786744, Length=797, Percent_Identity=37.7666248431619, Blast_Score=518, Evalue=1e-148,
Organism=Escherichia coli, GI1786332, Length=807, Percent_Identity=31.8463444857497, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1788427, Length=721, Percent_Identity=27.7392510402219, Blast_Score=282, Evalue=7e-77,
Organism=Escherichia coli, GI87081778, Length=762, Percent_Identity=29.1338582677165, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1789610, Length=668, Percent_Identity=27.6946107784431, Blast_Score=177, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 86606; Mature: 86475

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTYVTNTGLMATYGGQFTLTNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEI
CCCEEECCCEEEEECCEEEECCCHHCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEECC
PALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIP
CCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
TLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSY
EEEECEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
LQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
HHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCE
IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQ
EEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCHHH
RPRHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIG
CCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECCC
GTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFS
CHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
FDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQ
ECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCCC
WGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDG
CCCEEEEECEEEECCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEECC
SLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVI
CCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEE
HPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIPYLTTYQENRLSVDTT
ECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEECC
QLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQ
CCCCCCCHHHCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
QSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEPTTSVLQGTAQCH
HHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
GTYVTNTGLMATYGGQFTLTNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEI
CCEEECCCEEEEECCEEEECCCHHCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEECC
PALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIP
CCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
TLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSY
EEEECEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
LQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
HHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCE
IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQ
EEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCHHH
RPRHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIG
CCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECCC
GTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFS
CHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
FDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQ
ECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCCC
WGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDG
CCCEEEEECEEEECCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEECC
SLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVI
CCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEE
HPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIPYLTTYQENRLSVDTT
ECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEECC
QLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQ
CCCCCCCHHHCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
QSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEPTTSVLQGTAQCH
HHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]