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The map label for this gene is yraM [H]

Identifier: 82545613

GI number: 82545613

Start: 3239642

End: 3241669

Strand: Reverse

Name: yraM [H]

Synonym: SBO_3235

Alternate gene names: 82545613

Gene position: 3241669-3239642 (Counterclockwise)

Preceding gene: 82545617

Following gene: 82545612

Centisome position: 71.72

GC content: 54.19

Gene sequence:

>2028_bases
ATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGCCGGTTG
TGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGA
TGCAGCAAAGCTCTGATGATACCAGGATCAACTGGCAATTACTCGCCATTCGTGCACTGGTGAAAGAAGGTAAAACCGGG
CAGGCGGTTGAGTTGTTTAACCAACTACCGCAAGAACTGAACGATTCTCAGCGTCGCGAGAAAACACTGCTGGCGGTAGA
GATTAAACTGGCGCAGAAAGATTTTGCTGGCGCGCAAAACTTGCTGGCGAAAATCACACCTGCCGATTTAGAACAAAACC
AGCAAGCGCGTTACTGGCAGGCAAAAATCGATGCCAGCCAGGGGCGTCCTTCCATTGATTTACTGCGCGCGTTAATTGCT
CAGGAACCGCTGCTCGGCGCGAAAGAAAAAAAGCAGAATATTGATGCCACCTGGCAGGCGCTCTCCTCCATGACTCAGGA
ACAGGCGAATACGCTGGTGATCAACGCCGACGAAAATATTCTGCAAGGCTGGCTGGATCTGCAGCGCGTCTGGTTTGATA
ACCGTAACGATCCCGATATGATGAAAGCCGGGATCGCCGACTGGCAGAAACGTTATCCGAACAATCCGGGCGCGAAAATG
CTGCCAACGCAGTTGGTTAACGTAAAAGCGTTTAAACCAGCCTCGACCAACAAAATCGCCCTGCTGTTGCCGCTGAATGG
CCAGGCAGCGGTATTTGGTCGCACTATTCAGCAAGGCTTTGAAGCGGCGAAAAATATCGGCACTCAGCCAGTGGCGGCTC
AGGTAGCTGCCGCAGACGTAGCAGAACAACCTCAGCCGCAAACTGCGGATGGCGTTGCCAGCCCGGCACAAGCCTCGGTT
AGCGATCTGACCGGTGATCAGCCTGCGGCCCAGCCGGTGCCTGTAAGCGCCCCGGCGACAAGCACCGCAGCGGTAAGCGC
ACCCGCAAATCCATCCGCAGAGCTGAAAATCTACGATACCTCATCACAACCACTTAGCCAGATCTTAAGCCAGGTTCAGC
AGGATGGCGCGAGTATTGTGGTTGGTCCGTTGCTGAAAAATAACGTTGAAGAGTTGCTTAAGAGCAACACCCCGCTGAAC
GTGCTGGTACTGAACCAGCCGGAGAATATCGAAAACCGCGTCAATATTTGTTACTTCGCGCTTTCACCGGAAGACGAAGC
GCGCGATGCAGCGCGTCATATTCGTGACCAGGGTAAACAAGCGCCGCTGGTGCTGATCCCACGCAGTTCATTGGGCGATC
GCGTAGCCAATGCGTTTGCGCAGGAGTGGCAGAAACTGGGCGGCGGCACCGTTCTGCAACAAAAATTTGGTTCCACCAGC
GAATTACGCGCGGGTGTTAACGGCGGTTCTGGTATCGCTTTAACGGGTACCCCGATTACTCCCAGAGCGACAACCGACTC
CGGCATGACGACCAACAATCCAACGCTGCAAACCACGCCAACCGATGACCAGTTCACCAATAATGGCGGTCGTGTCGATG
CGGTGTACATTGTGGCAACGCCGGGTGAAATCGCTTTTATCAAACCGATGATCGCCATGCGTAACGGTAGCCAGAGCGGT
GCAATGCTGTACGCCAGCTCCCGCAGCGCACAAGGCACCGCAGGCCCGGATTTCCGTCTGGAGATGGAAGGTTTGCAGTA
CAGCGAAATCCCGATGCTGGCGGGCGGTAATCTGCCGTTAATGCAGCAGGCACTCAGCGCGGTGAATAACGATTATTCAC
TGGCTCGCATGTATGCGATGGGCGTCGATGCCTGGTCGCTGGCAAATCATTTCTCACAAATGCGCCAGGTTCAGGGTTTT
GAAATCAACGGTAATACCGGAAGCCTGACGGCAAACCCGGATTGCGTGATTAACAGGAAGTTATCATGGCTACAGTACCA
ACAAGGTCAGGTAGTCCCCGCCAGTTAA

Upstream 100 bases:

>100_bases
GGCCCTGAGAATTATCCGCCGATTGGTGTTGTTTCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAA
AAAATATCACTGGATACATT

Downstream 100 bases:

>100_bases
CCACCAAACAGACCGGCGATGCGTGGGAAGTACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGATTTGTCGCCGCT
AACGTGAACGAGCGTGGCGG

Product: glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASV
SDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLN
VLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS
ELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSG
AMLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGF
EINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS

Sequences:

>Translated_675_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASV
SDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLN
VLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS
ELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSG
AMLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGF
EINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>Mature_675_residues
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTG
QAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASV
SDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLN
VLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS
ELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSG
AMLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGF
EINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1655 [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=678, Percent_Identity=97.787610619469, Blast_Score=1321, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 72603; Mature: 72603

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCC
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQN
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHEEEEEEEEEHHHHHCCHHH
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKKQNIDATWQA
HHHHCCCHHCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHH
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAADV
CCHHHEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AEQPQPQTADGVASPAQASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDT
HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEC
SSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLVLNQPENIENRVNICYFA
CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
LSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS
ECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEHHHCCCHH
ELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVAT
HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
PGEIAFIKPMIAMRNGSQSGAMLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPL
CCCEEEHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHH
MQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRK
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEECCCCEEEECC
LSWLQYQQGQVVPAS
HHHHHHCCCEEECCC
>Mature Secondary Structure
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCC
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQN
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHEEEEEEEEEHHHHHCCHHH
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKKQNIDATWQA
HHHHCCCHHCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHH
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAADV
CCHHHEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AEQPQPQTADGVASPAQASVSDLTGDQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDT
HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEC
SSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLVLNQPENIENRVNICYFA
CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
LSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS
ECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEHHHCCCHH
ELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVAT
HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
PGEIAFIKPMIAMRNGSQSGAMLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPL
CCCEEEHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHH
MQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRK
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEECCCCEEEECC
LSWLQYQQGQVVPAS
HHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]