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The map label for this gene is ygbI [H]

Identifier: 82545192

GI number: 82545192

Start: 2791971

End: 2792768

Strand: Direct

Name: ygbI [H]

Synonym: SBO_2785

Alternate gene names: 82545192

Gene position: 2791971-2792768 (Clockwise)

Preceding gene: 82545186

Following gene: 82545195

Centisome position: 61.77

GC content: 50.88

Gene sequence:

>798_bases
ATGTCAGCAGGACAAAGGAAGGAGCAAAAGTTGATACCCGTAGAGCGTCGCCAAATCATCCTTGAGATGGTAGCTGAAAA
AGGCATTGTCAGTATTGCTGAACTAACGGACAGAATGAATGTATCACATATGACCATTCGTCGGGATTTACAAAAACTGG
AGCAGCAGGGAGCCGTTGTGCTGGTGTCCGGAGGCGTCCAGTCTCCGGGACGCGTGGCGCATGAACCTTCTCATCAGGTA
AAAACTGCGCTAGCAATGACGCAAAAAGCGGCTATTGGCAAGCTGGCGGCAAGTCTTGTTCAGCCGGGAAGTTGTATCTA
TCTGGATGCAGGAACGACCACGTTAGCGATAGCACAGCATCTGATTCACATGGAGTCACTGACTGTGGTCACAAACGATT
TCGTTATTGCGAACTACTTGCTCGACAACAGTAATTGCACAATTATTCACACTGGCGGTGCAGTGTGTCGGGAAAACCGT
TCCTGTGTCGGGGAAGCCGCTGCGACCATGCTGCGCAGCCTGATGATTGATCAGGCTTTTATTTCTGCATCGTCATGGAG
TGTGCGGGGGATTTCTACGCCAGCGGAAGATAAAGTCACGGTGAAACGGGCGATTGCTAGTGCCAGCCGCCAGCGAGTTT
TGGTCTGTGATGCGACGAAATATGGTCAGGTGGCGACATGGCTGGCGTTACCATTAAGCGAGTTTGATCAGATTATTACA
GACGACGGTTTGCCGGAGAGTGCCAGTCGCGCGCTGGCGAAGCAGGATCTCTCTTTGCTGGTAGCGAAAAATGAATAA

Upstream 100 bases:

>100_bases
CGATATGGTGAGCCGATTCACATAAATTAACATTGTGTGTTATTTTATGTGAACTAAGCGTTAGTTGCGCCGCGCACGTT
TCGCAGGCAAATAGCGTAGA

Downstream 100 bases:

>100_bases
TGGCCTGCAATAACATCTGGTTACTCATGCTTCACAGAAGAAGCATGAGACTACCTTATTTTATAAAATGACAGCCGCCC
ACTTTTCGGCGATCCGGTAT

Product: DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKQDLSLLVAKNE

Sequences:

>Translated_265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKQDLSLLVAKNE
>Mature_264_residues
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVK
TALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRS
CVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITD
DGLPESASRALAKQDLSLLVAKNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=98.8235294117647, Blast_Score=517, Evalue=1e-148,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=30.4347826086957, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=29.4820717131474, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=30.8943089430894, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=28.4, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=26.9230769230769, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790753, Length=223, Percent_Identity=29.5964125560538, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790635, Length=251, Percent_Identity=25.0996015936255, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787063, Length=210, Percent_Identity=30.4761904761905, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=25.3275109170306, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=26.0504201680672, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28532; Mature: 28401

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVV
CCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
LIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAF
HHHHHHHEEEECCEEEEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKQDLSLLVAKNE
CCCCCHHHHHHHHHHCCEEEEEECC
>Mature Secondary Structure 
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVV
CCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
LIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAF
HHHHHHHEEEECCEEEEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKQDLSLLVAKNE
CCCCCHHHHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]