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The map label for this gene is rimP

Identifier: 78779968

GI number: 78779968

Start: 1480233

End: 1480700

Strand: Direct

Name: rimP

Synonym: PMT9312_1584

Alternate gene names: 78779968

Gene position: 1480233-1480700 (Clockwise)

Preceding gene: 78779965

Following gene: 78779969

Centisome position: 86.6

GC content: 27.14

Gene sequence:

>468_bases
TTGAACAAAGAACAAAAAAGTAGACTAGAAAACCTTTTAGAAAAAGTTGCAAATGTATTGGATTACAAAATCTGCAGTGT
AAATTTACAAACTAATCAGAATCCAATCGTTATTAAAATTATTATAAAAAAAACTAACGGTGATGATATTTCACTAGATG
ATTGTGCGTTATTTAATACCCCAGCATCTGAAGAAATAGAGAATTCAAATCTTTTAAAATGTTCATATGTGTTAGAAATT
AGTAGTCAAGGGGTCAGTGATGAATTAACCTCAGAAAGAGACTTCAAAACTTTTAAGGGTTTTCCAGTTAATGTTGAGTT
AAACCAGAAGAATTCAAAAATAAAATTTCTCAATGGTTTACTTTATGAAAAGTCTAAAGATTATTTAGCCATTAACATAA
AAGGTAAGATTAAAAAAATCCCTTTTAATGAAGTACTCAAGATTAGTCTTTGCACATTAAAAGATTAA

Upstream 100 bases:

>100_bases
TTTTTTTGTTTACATCCATAAAAATATAAATTTTTGAATTTTTTATAAAAAAAACTTTTTATATGTGAAAATAATTTTAA
ATCAATTTATATAAATAAAT

Downstream 100 bases:

>100_bases
TTAATTTTCAACCATTATTCAATTTCCCATCATAGATGGCATTAGTTATTCTACCAGGTTTAAACAATCTCATTGAGGAC
ATTAGTGAGGAAAAAAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLKCSYVLEI
SSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKIKKIPFNEVLKISLCTLKD

Sequences:

>Translated_155_residues
MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLKCSYVLEI
SSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKIKKIPFNEVLKISLCTLKD
>Mature_155_residues
MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLKCSYVLEI
SSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKIKKIPFNEVLKISLCTLKD

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_PROM9 (Q318Q1)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_398080.1
- ProteinModelPortal:   Q318Q1
- SMR:   Q318Q1
- STRING:   Q318Q1
- GeneID:   3766401
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_1584
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   AYVLEIS
- ProtClustDB:   PRK14646
- BioCyc:   PMAR74546:PMT9312_1584-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17590; Mature: 17590

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNT
CCHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECC
PASEEIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGL
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCEEEEEHHE
LYEKSKDYLAINIKGKIKKIPFNEVLKISLCTLKD
EEECCCCEEEEEECCEEEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNT
CCHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECC
PASEEIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGL
CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCEEEEEHHE
LYEKSKDYLAINIKGKIKKIPFNEVLKISLCTLKD
EEECCCCEEEEEECCEEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA