| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is lpxB
Identifier: 78779816
GI number: 78779816
Start: 1344336
End: 1345514
Strand: Reverse
Name: lpxB
Synonym: PMT9312_1432
Alternate gene names: 78779816
Gene position: 1345514-1344336 (Counterclockwise)
Preceding gene: 78779817
Following gene: 78779815
Centisome position: 78.72
GC content: 31.47
Gene sequence:
>1179_bases ATGAATAAAAAGATATTTATCAGTACCGGAGAAGTCTCTGGAGATTTACATGGGGGGTTATTGTCAAAAGCGTTATTTGA TGAAGCGGAAAAAAAATCTTTAGATTTAGAAATTTGCGGTTTAGGTGGGGAAAGGATGAAGAAAGAAGGTGTAAAAATTC TTCAAGATACTACATCAATTAGTGCAATAGGAATTTGGGAGGCTTTACCTCTTATTATTCCCACAATAAGAATTCAAAAA AGATTTTATAAATTACTAAAAAAATATCCTCCAGATTGTTTAATTTTGATTGACTATATGGGTCCTAATATAAAAATTGG AAGAAAATTAAAAAGATCGAAGACTAAAATTCCAATTTTCTACTATATTGCTCCTCAAGAGTGGGCATGGAGGGTTGGCA ATAATACTACAACTGATTTAATAAATTTTTCCGATAAAATTTTTGCAATTTTCAGACAAGAAGCAGCCTTTTATAAAAAG AGAGGTGGAAATGTCTTGTGGGTTGGACATCCAATGATCGATTTGACAAAAAAACTTCCTTTAAAGAAGAATGCCAGAAC TATTCTTAACCTTCGCCCAAATCAAAACATTCTACTTTTAATGCCCGCATCAAGACCTCAAGAATTGAAATATATATTAC CAACTTTTATGCGGACTGCCAGAAAATTACAAAAAAAATATCCAAGTTTAGTTGTCTATATTCCTTCCTGCAGGAAAGTT TTTGATGAAAGATTCAAAAAGGCCTTTAGAAAATATCAAGTTATTGGACAAGTAATTTCTCAAAAAGATAACGCAAAATT AAAGCCTTATATTTATTCGCTCACTAAAATAGCTATTTGCAAATCCGGGACAGTGAATATGGAATTAGCTTTATACGGAA TACCACAGATTGTGGGGTACAGAGTAAGTAGGGTTACTGCATTTATTGCCAAAAAAATTCTTAATTTCAAAGTAAAATTT ATTTCCCCTGTAAATTTGTTAGTTAATAAGTTAATAATCCCTGAATTTGTACAGGGAGACTTTGATGAAAAGAAAATCTT TTATAAAGCTTGCAGGATTCTGGACCTTACATCAGAAAAATCAAAAATTAAAAAAGGTTACACTCTTTTAAAAAAAGAAT TAGGGGAAGAGGGCGTAGTCCAGCGAGCTGCTAAAGAGATTATTAATTCTATTATTTGA
Upstream 100 bases:
>100_bases CATTAAAAGACACATTAGATCTTTCTTCAAAACAATTATGTGATTTTTTAAAAGAATCAATATCAAAAGAAAGACGAGGC CCAATGCCTTTAATAAATGA
Downstream 100 bases:
>100_bases ATTTTATAATAAAAAAATGAAATATTTCTTACCTCTAATAATTGCTCTTTCAATATTTATTAATCCTGTAAACGCTTTTG CAGAGGAATTGATTCTTGCA
Product: lipid-A-disaccharide synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MNKKIFISTGEVSGDLHGGLLSKALFDEAEKKSLDLEICGLGGERMKKEGVKILQDTTSISAIGIWEALPLIIPTIRIQK RFYKLLKKYPPDCLILIDYMGPNIKIGRKLKRSKTKIPIFYYIAPQEWAWRVGNNTTTDLINFSDKIFAIFRQEAAFYKK RGGNVLWVGHPMIDLTKKLPLKKNARTILNLRPNQNILLLMPASRPQELKYILPTFMRTARKLQKKYPSLVVYIPSCRKV FDERFKKAFRKYQVIGQVISQKDNAKLKPYIYSLTKIAICKSGTVNMELALYGIPQIVGYRVSRVTAFIAKKILNFKVKF ISPVNLLVNKLIIPEFVQGDFDEKKIFYKACRILDLTSEKSKIKKGYTLLKKELGEEGVVQRAAKEIINSII
Sequences:
>Translated_392_residues MNKKIFISTGEVSGDLHGGLLSKALFDEAEKKSLDLEICGLGGERMKKEGVKILQDTTSISAIGIWEALPLIIPTIRIQK RFYKLLKKYPPDCLILIDYMGPNIKIGRKLKRSKTKIPIFYYIAPQEWAWRVGNNTTTDLINFSDKIFAIFRQEAAFYKK RGGNVLWVGHPMIDLTKKLPLKKNARTILNLRPNQNILLLMPASRPQELKYILPTFMRTARKLQKKYPSLVVYIPSCRKV FDERFKKAFRKYQVIGQVISQKDNAKLKPYIYSLTKIAICKSGTVNMELALYGIPQIVGYRVSRVTAFIAKKILNFKVKF ISPVNLLVNKLIIPEFVQGDFDEKKIFYKACRILDLTSEKSKIKKGYTLLKKELGEEGVVQRAAKEIINSII >Mature_392_residues MNKKIFISTGEVSGDLHGGLLSKALFDEAEKKSLDLEICGLGGERMKKEGVKILQDTTSISAIGIWEALPLIIPTIRIQK RFYKLLKKYPPDCLILIDYMGPNIKIGRKLKRSKTKIPIFYYIAPQEWAWRVGNNTTTDLINFSDKIFAIFRQEAAFYKK RGGNVLWVGHPMIDLTKKLPLKKNARTILNLRPNQNILLLMPASRPQELKYILPTFMRTARKLQKKYPSLVVYIPSCRKV FDERFKKAFRKYQVIGQVISQKDNAKLKPYIYSLTKIAICKSGTVNMELALYGIPQIVGYRVSRVTAFIAKKILNFKVKF ISPVNLLVNKLIIPEFVQGDFDEKKIFYKACRILDLTSEKSKIKKGYTLLKKELGEEGVVQRAAKEIINSII
Specific function: Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG0763
COG function: function code M; Lipid A disaccharide synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lpxB family [H]
Homologues:
Organism=Escherichia coli, GI1786379, Length=342, Percent_Identity=28.0701754385965, Blast_Score=132, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003835 [H]
Pfam domain/function: PF02684 LpxB [H]
EC number: =2.4.1.182 [H]
Molecular weight: Translated: 44927; Mature: 44927
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKIFISTGEVSGDLHGGLLSKALFDEAEKKSLDLEICGLGGERMKKEGVKILQDTTSI CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCC SAIGIWEALPLIIPTIRIQKRFYKLLKKYPPDCLILIDYMGPNIKIGRKLKRSKTKIPIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHCCCCCEEE YYIAPQEWAWRVGNNTTTDLINFSDKIFAIFRQEAAFYKKRGGNVLWVGHPMIDLTKKLP EEECCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC LKKNARTILNLRPNQNILLLMPASRPQELKYILPTFMRTARKLQKKYPSLVVYIPSCRKV CCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH FDERFKKAFRKYQVIGQVISQKDNAKLKPYIYSLTKIAICKSGTVNMELALYGIPQIVGY HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCEEEEEEECCHHHHHH RVSRVTAFIAKKILNFKVKFISPVNLLVNKLIIPEFVQGDFDEKKIFYKACRILDLTSEK HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHCCCCHH SKIKKGYTLLKKELGEEGVVQRAAKEIINSII HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNKKIFISTGEVSGDLHGGLLSKALFDEAEKKSLDLEICGLGGERMKKEGVKILQDTTSI CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCC SAIGIWEALPLIIPTIRIQKRFYKLLKKYPPDCLILIDYMGPNIKIGRKLKRSKTKIPIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHCCCCCEEE YYIAPQEWAWRVGNNTTTDLINFSDKIFAIFRQEAAFYKKRGGNVLWVGHPMIDLTKKLP EEECCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC LKKNARTILNLRPNQNILLLMPASRPQELKYILPTFMRTARKLQKKYPSLVVYIPSCRKV CCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH FDERFKKAFRKYQVIGQVISQKDNAKLKPYIYSLTKIAICKSGTVNMELALYGIPQIVGY HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCEEEEEEECCHHHHHH RVSRVTAFIAKKILNFKVKFISPVNLLVNKLIIPEFVQGDFDEKKIFYKACRILDLTSEK HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHCCCCHH SKIKKGYTLLKKELGEEGVVQRAAKEIINSII HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA