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The map label for this gene is degT [H]

Identifier: 78779687

GI number: 78779687

Start: 1211581

End: 1212684

Strand: Direct

Name: degT [H]

Synonym: PMT9312_1304

Alternate gene names: 78779687

Gene position: 1211581-1212684 (Clockwise)

Preceding gene: 78779686

Following gene: 78779688

Centisome position: 70.89

GC content: 32.34

Gene sequence:

>1104_bases
ATGAAAATTCCATTCTTCGATTACCCAAGACTTTTTTTAGATAAAAAAGATGAATATATGAATATCTTCTCAGATGTAGC
TTCAAGAGGGGCTTTTATTATGCAGGATGACGTAGATATTTTCGAAAAAAATTTATCAATCTTTTCATCTTCAAAATATG
CAATTGGAGTAGGTAATGCTACCGATGGTCTTGAAATTTCATGGATGGCATTAAATTTAAGACAAGGTGATGAAGTTATT
TGTTGTTCCCATACTATGTTGGCAACTGCATCTGCAATTAAAGTAGCAGGGGGAATTCCAATTCCAGTAGAGATAGGAGA
TGATAATTTAATAGATCCCGATGCAGTTGAAAACGCAATCACATCACGTACTGTTGGGATAATGCCCACACAGCTAAATG
GGCGCACATGTGATATGGAAAGGATTATGCAAATAGCTAATAAATATAAACTTTATGTTGTTGAAGATGCAGCTCAAGCC
TTAGGATCAAAATTCAAGGGGAAAAATGCCGGGACATTTGGACACTCATCAGCTATAAGTTTTTTCCCTGCAAAAGTTCT
TGGTTGTTTTGGCGATGCAGGTGCCATATTATGCCAAGATGAAACAATTTTTGATAGAGCCTATCAACTTCATGATCATG
GTAGAGATAAGAATGGTAATGTTAAATCATGGGGTAGAAATAGTAGAATTGATAACTTACAAGCAGCAATATTAAATTTT
AATCTAAAGTCTTATGAAAAAGTAATTGAAAGAAGAAGAGAAATAGCATCTAAATACTTCTCTAAACTTTCGATTTTAGA
AGAATTAAAATTACCAGAATCCCCATTTAATAATTCTGATCATTATGATGTTTATCAAAATTATGAGATAGTTGCAAAAA
GAAGAGATGAGTTACAGAAATATCTTAGAGATTATGGCATTGGAACATTAGTACAGTGGGGTGGGAAAGCTATTCATCAA
TGGGAGCATCTTGGTTTCAATTTACATTTACCCAAATCAGAAGCATTTTTTAAAGAATGTATAATGATTCCAATGAACAT
GTTTATTACTAACGAAGATATAGATTATATATGTCAAAAAATTATTGAATTTTATCGAAAATGA

Upstream 100 bases:

>100_bases
CACCAACAAGCAAAGTTTTGGAAAAAGAATACTATCCAAATGAGAAAAAAATATTAAATAAAATTTTTAAAATTTTTGAA
AATAATTTATAATTATTTCT

Downstream 100 bases:

>100_bases
AAAGGGTTTTCGATCTCATATTTTCATTTTTAGGCCTTATTCTCCTCTTTCCGATAATCATAATTGCTTGTTTTGGTATT
TATTTACAGGATCAACATAC

Product: pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MKIPFFDYPRLFLDKKDEYMNIFSDVASRGAFIMQDDVDIFEKNLSIFSSSKYAIGVGNATDGLEISWMALNLRQGDEVI
CCSHTMLATASAIKVAGGIPIPVEIGDDNLIDPDAVENAITSRTVGIMPTQLNGRTCDMERIMQIANKYKLYVVEDAAQA
LGSKFKGKNAGTFGHSSAISFFPAKVLGCFGDAGAILCQDETIFDRAYQLHDHGRDKNGNVKSWGRNSRIDNLQAAILNF
NLKSYEKVIERRREIASKYFSKLSILEELKLPESPFNNSDHYDVYQNYEIVAKRRDELQKYLRDYGIGTLVQWGGKAIHQ
WEHLGFNLHLPKSEAFFKECIMIPMNMFITNEDIDYICQKIIEFYRK

Sequences:

>Translated_367_residues
MKIPFFDYPRLFLDKKDEYMNIFSDVASRGAFIMQDDVDIFEKNLSIFSSSKYAIGVGNATDGLEISWMALNLRQGDEVI
CCSHTMLATASAIKVAGGIPIPVEIGDDNLIDPDAVENAITSRTVGIMPTQLNGRTCDMERIMQIANKYKLYVVEDAAQA
LGSKFKGKNAGTFGHSSAISFFPAKVLGCFGDAGAILCQDETIFDRAYQLHDHGRDKNGNVKSWGRNSRIDNLQAAILNF
NLKSYEKVIERRREIASKYFSKLSILEELKLPESPFNNSDHYDVYQNYEIVAKRRDELQKYLRDYGIGTLVQWGGKAIHQ
WEHLGFNLHLPKSEAFFKECIMIPMNMFITNEDIDYICQKIIEFYRK
>Mature_367_residues
MKIPFFDYPRLFLDKKDEYMNIFSDVASRGAFIMQDDVDIFEKNLSIFSSSKYAIGVGNATDGLEISWMALNLRQGDEVI
CCSHTMLATASAIKVAGGIPIPVEIGDDNLIDPDAVENAITSRTVGIMPTQLNGRTCDMERIMQIANKYKLYVVEDAAQA
LGSKFKGKNAGTFGHSSAISFFPAKVLGCFGDAGAILCQDETIFDRAYQLHDHGRDKNGNVKSWGRNSRIDNLQAAILNF
NLKSYEKVIERRREIASKYFSKLSILEELKLPESPFNNSDHYDVYQNYEIVAKRRDELQKYLRDYGIGTLVQWGGKAIHQ
WEHLGFNLHLPKSEAFFKECIMIPMNMFITNEDIDYICQKIIEFYRK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=338, Percent_Identity=29.2899408284024, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI2367285, Length=241, Percent_Identity=32.7800829875519, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41692; Mature: 41692

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPFFDYPRLFLDKKDEYMNIFSDVASRGAFIMQDDVDIFEKNLSIFSSSKYAIGVGNA
CCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEECCCC
TDGLEISWMALNLRQGDEVICCSHTMLATASAIKVAGGIPIPVEIGDDNLIDPDAVENAI
CCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
TSRTVGIMPTQLNGRTCDMERIMQIANKYKLYVVEDAAQALGSKFKGKNAGTFGHSSAIS
HHCEEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCHHH
FFPAKVLGCFGDAGAILCQDETIFDRAYQLHDHGRDKNGNVKSWGRNSRIDNLQAAILNF
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
NLKSYEKVIERRREIASKYFSKLSILEELKLPESPFNNSDHYDVYQNYEIVAKRRDELQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH
YLRDYGIGTLVQWGGKAIHQWEHLGFNLHLPKSEAFFKECIMIPMNMFITNEDIDYICQK
HHHHCCCHHHHHHCCHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHEEEECCCHHHHHHH
IIEFYRK
HHHHHCC
>Mature Secondary Structure
MKIPFFDYPRLFLDKKDEYMNIFSDVASRGAFIMQDDVDIFEKNLSIFSSSKYAIGVGNA
CCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEECCCC
TDGLEISWMALNLRQGDEVICCSHTMLATASAIKVAGGIPIPVEIGDDNLIDPDAVENAI
CCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
TSRTVGIMPTQLNGRTCDMERIMQIANKYKLYVVEDAAQALGSKFKGKNAGTFGHSSAIS
HHCEEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCHHH
FFPAKVLGCFGDAGAILCQDETIFDRAYQLHDHGRDKNGNVKSWGRNSRIDNLQAAILNF
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
NLKSYEKVIERRREIASKYFSKLSILEELKLPESPFNNSDHYDVYQNYEIVAKRRDELQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH
YLRDYGIGTLVQWGGKAIHQWEHLGFNLHLPKSEAFFKECIMIPMNMFITNEDIDYICQK
HHHHCCCHHHHHHCCHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHEEEECCCHHHHHHH
IIEFYRK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]