| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is 78779534
Identifier: 78779534
GI number: 78779534
Start: 1067348
End: 1068796
Strand: Direct
Name: 78779534
Synonym: PMT9312_1151
Alternate gene names: NA
Gene position: 1067348-1068796 (Clockwise)
Preceding gene: 78779533
Following gene: 78779535
Centisome position: 62.45
GC content: 32.09
Gene sequence:
>1449_bases ATGTCAGAACAAGATGCGGACCAAAGTAATTCTTTGAATAATCAATGGAAAAAAAGATTACAAGAGATAGGGCAGGGGGC TTTTGAATTTGAAGAAATGCTCCGTTTAGGCTTCATTGATTTGGATACTATTAAGCGTTTCGATAAAGAAATGACTATTG AGGAATCTAAAGAAGTTTTTGAACAGTTAACTAAAACCAGTGCAATATTAAGTGAAGTTGATAAAGAAATAAATTCCATT AATCGTATAGAGGAACTTCTCGCAGAAATAAGATCTCGAAGAATAAAAAGAGTTAAGGAGGCTGCTAAAGAAAAGAAAAT TAAGAAGCAAGAGGAAAAGATTAAACGGTCGAAAGAAATTAAAGAACGAAAAATTAATTCCCCAACATTTTTGGGGAGAG GGGTTTCAAATAGACTTAGTTTTGAAAAAGTTAAAAAGGTAGATTTTAAATCCAATAAAATTCCTGAACTTAATTCTTTT GTTGATGTAGCTAATGCTTTAGAGGTAACTCCATCCAAATTGCAATGGCTTATTTATGAAAGAGGTGCAAGTAATATTGA TCATTATTTAAGATATGAGATACCAAAAAAATCAGGAGGTAAGAGATTAATTTCCAGTCCAAAGAAAGATATGAAAAAAG CTCAGAAATGGATCTTGGAAAATATTTTAATTAACCTTGATGTTGATAAAGCGGCTATGGCTTTTCAAAAAGGTTTATCA ATTATTGATAATGCATCCTTACATGTCAAATCAAAAATTATAGTCCGTATAGATATAAAAGACTTTTTCCCTACTATCAC TTTTCCCCGTGTAAGAGGTTTTTTCGAATCTTTAGGTTATAACCCTGGTGTTGCAACTGTCTTTGCATTGATTTGTACGG ATAGTCCTAAAGTAATACTTAAGCAGGAAGCGATAGATGGAGACAAAAACAATAAAGATTATCCTCATTTTATAGCTATT AGTGAGAGGTCACTGCCTCAAGGTGCGTGTACTTCACCATCATTAGCTAATCTTATTTGCAGAAAAATTGACTCACGTCT TAATGGATATTCTTCAAAATCTGGATGGAAATATTCTAGATATGCAGATGATTTAATTTTTTCTACTACCTCTGAAGACA GCTATCCTCATAGATTAATAAAATCAATTTCATCGATAATATCTGAAGAAGGTTTTAAGGTAAATCAATCAAAAACAAGA TTGATGCGCGCACCTAATCGACAAACTGTTACTGGTTTAGTTGTTAATAATGAAGTAACTCTTAGCAGAAGAGATTTAAA ACGAATGCGTGCATTTTTTCATCAATGTTCTTCTAAAGGTTTAGATTTCATGAGTGAGAAAATTGGTAAAGATGCATTAT CTGTAGCGCGTGGATATATCTCATATGTCGAAATGGTTTCACCTACAATTGCAGAAAAATTTCTTTCAACCAATTCCTGG ATAAAATAA
Upstream 100 bases:
>100_bases ATTAATGCGCAATGCGACTGTTCTCATTTTCGATTTCATAAACTTAGACAAGGACCTTGTAGACATATTGTTTGCTTAAG CTTGAAGGGAGGTGGATAAG
Downstream 100 bases:
>100_bases TTCAAAATAAATGTCTAAAAAATTCCCAATATTATTTCCCGAATTGCTTGCTGATTTTGAATTAATTAAAGGTTCAAGTG ATGATCCTGATGAAACTGAT
Product: retron-type reverse transcriptase
Products: NA
Alternate protein names: Mx162-RT; Reverse transcriptase [H]
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSI NRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSF VDVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAI SERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTR LMRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW IK
Sequences:
>Translated_482_residues MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSI NRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSF VDVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAI SERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTR LMRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW IK >Mature_481_residues SEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSIN RIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFV DVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLSI IDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAIS ERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRL MRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSWI K
Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]
COG id: COG3344
COG function: function code L; Retron-type reverse transcriptase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 reverse transcriptase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000123 - InterPro: IPR000477 [H]
Pfam domain/function: PF00078 RVT_1 [H]
EC number: =2.7.7.49 [H]
Molecular weight: Translated: 55151; Mature: 55020
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: PS50878 RT_POL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVF CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH EQLTKTSAILSEVDKEINSINRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFVDVANALEVTPSKLQWLIYE HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH RGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS CCCCCHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVIL HHCCCCEEEEEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE KQEAIDGDKNNKDYPHFIAISERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSR EHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH YADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRLMRAPNRQTVTGLVVNNEVT HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCEE LSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW ECHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IK CC >Mature Secondary Structure SEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVF CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH EQLTKTSAILSEVDKEINSINRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFVDVANALEVTPSKLQWLIYE HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH RGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS CCCCCHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVIL HHCCCCEEEEEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE KQEAIDGDKNNKDYPHFIAISERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSR EHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH YADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRLMRAPNRQTVTGLVVNNEVT HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCEE LSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW ECHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2465092; 2465091 [H]