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The map label for this gene is yibK [C]

Identifier: 78779323

GI number: 78779323

Start: 873514

End: 873996

Strand: Direct

Name: yibK [C]

Synonym: PMT9312_0939

Alternate gene names: 78779323

Gene position: 873514-873996 (Clockwise)

Preceding gene: 78779322

Following gene: 78779324

Centisome position: 51.11

GC content: 28.16

Gene sequence:

>483_bases
TTGGAAGTCACTCTATTTGAACCTAGAATCCCTCAAAATACTGGTAATATTGCCAGATCATGTGCTGCATTTAATATACC
TTTAAATCTTATAGAGCCCTTAGGTTTTAAACTAGAAGATAAATATTTAAAAAGAGCAGGATTAGACTATTGGCCTCTAG
TTACTGTTAATAAGTATGCAAATTTTAAAAAATTTTTAGCTTCAAAACAAACTAAAAGAATAATTTCTTTTAGTAAAAAG
AATGGAATATATTTGAAAGACTTTAAATTTCAGGAAGATGATGTTTTGCTATTTGGGAGAGAAGATTCAGGATTGCCAGA
TTTAATTATTGATAATAGTGACTATTTAATATCAATATTTATGCCAAATTTACAAACTGAAAACAATGATCAGAAAGGTG
TTAGGAGTCTAAATCTTTCTGTAGCATGCGGTATTGCTATATATGAGGCTCATAAACAAATAAATTCTCAAAATGGTAAT
TAA

Upstream 100 bases:

>100_bases
TTCAAAAGAGAATAACCAAAATATCCAAAGATAATTGGCTGGCAATAAATGGCAGAGCAATCAAAATAGATGATATAAGT
TTAGAAATACCTGCTTAAAA

Downstream 100 bases:

>100_bases
GTACAAGCAATGTCTTACAATATTCCCATGTCTCGGTAGCTCAGCTGGTTAGAGCGGCGGATTCATAGCCCGCAGGTCGC
GTGTTCAAGTCACGCTCGAG

Product: SpoU family tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEVTLFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYANFKKFLASKQTKRIISFSKK
NGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQNGN

Sequences:

>Translated_160_residues
MEVTLFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYANFKKFLASKQTKRIISFSKK
NGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQNGN
>Mature_160_residues
MEVTLFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYANFKKFLASKQTKRIISFSKK
NGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQNGN

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=155, Percent_Identity=36.1290322580645, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 18210; Mature: 18210

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVTLFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYA
CEEEEECCCCCCCCCHHHHHHEEECCCHHHHCCCCCCCCHHHHHHCCCCCCCEEEECCHH
NFKKFLASKQTKRIISFSKKNGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIF
HHHHHHHHHHHHHHHEECCCCCEEEEECEECCCCEEEEECCCCCCCCEEECCCCEEEEEE
MPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQNGN
ECCCCCCCCCCCCCEEECEEEEEHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEVTLFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYA
CEEEEECCCCCCCCCHHHHHHEEECCCHHHHCCCCCCCCHHHHHHCCCCCCCEEEECCHH
NFKKFLASKQTKRIISFSKKNGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIF
HHHHHHHHHHHHHHHEECCCCCEEEEECEECCCCEEEEECCCCCCCCEEECCCCEEEEEE
MPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQINSQNGN
ECCCCCCCCCCCCCEEECEEEEEHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]