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The map label for this gene is clpS

Identifier: 78779324

GI number: 78779324

Start: 874168

End: 874455

Strand: Direct

Name: clpS

Synonym: PMT9312_0940

Alternate gene names: 78779324

Gene position: 874168-874455 (Clockwise)

Preceding gene: 78779323

Following gene: 78779326

Centisome position: 51.14

GC content: 35.07

Gene sequence:

>288_bases
ATGTATAATTCACCCCTTACAGTATTAGATAATAAGAAATCTAAAGTAAAATATCCAGAAGCGAGGGTAATAGTTCTTGA
TGATAGTTTTAATACTTTTCAACATGTCGCAAATTGTCTTCTGATAATCATCCCAGGTATGAGTGAAAATAGGGCATGGG
ATCTAACCATTAAAGTAGACAATACAGGTTCAGCAGAAGTATGGAGAGGAAATCTTGAACAGGCAGAGCTATATCATGAG
CAACTTGTCAGCAAAGGTTTAACTATGGCTCCAATTGACAAAACATAA

Upstream 100 bases:

>100_bases
GCAGGTCGCGTGTTCAAGTCACGCTCGAGACATTATCAATACTTTTCGATTAAAGATGTTAGGTGAAATTTCTAACCTAC
AATAACTAATACACACAAAT

Downstream 100 bases:

>100_bases
AAATAATTAAAATTGACAGAGAATTTTTGGCTTATATATTCGAACAGTTCAAGGATTAATAAATATGCAAAGAATAAGCA
AAATAAAGATAAATTTTTTG

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MYNSPLTVLDNKKSKVKYPEARVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVDNTGSAEVWRGNLEQAELYHE
QLVSKGLTMAPIDKT

Sequences:

>Translated_95_residues
MYNSPLTVLDNKKSKVKYPEARVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVDNTGSAEVWRGNLEQAELYHE
QLVSKGLTMAPIDKT
>Mature_95_residues
MYNSPLTVLDNKKSKVKYPEARVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVDNTGSAEVWRGNLEQAELYHE
QLVSKGLTMAPIDKT

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 10735; Mature: 10735

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNSPLTVLDNKKSKVKYPEARVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVD
CCCCCEEEEECCCCCCCCCCEEEEEEECCCHHHHHHHHEEEEEECCCCCCCEEEEEEEEC
NTGSAEVWRGNLEQAELYHEQLVSKGLTMAPIDKT
CCCCCEEEECCCHHHHHHHHHHHHCCCEECCCCCC
>Mature Secondary Structure
MYNSPLTVLDNKKSKVKYPEARVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVD
CCCCCEEEEECCCCCCCCCCEEEEEEECCCHHHHHHHHEEEEEECCCCCCCEEEEEEEEC
NTGSAEVWRGNLEQAELYHEQLVSKGLTMAPIDKT
CCCCCEEEECCCHHHHHHHHHHHHCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]