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The map label for this gene is psb28 [H]

Identifier: 78779258

GI number: 78779258

Start: 807608

End: 807961

Strand: Reverse

Name: psb28 [H]

Synonym: PMT9312_0874

Alternate gene names: 78779258

Gene position: 807961-807608 (Counterclockwise)

Preceding gene: 78779259

Following gene: 78779257

Centisome position: 47.27

GC content: 35.88

Gene sequence:

>354_bases
ATGACAGCAAATAAAACTGCAAAAATACAATTTTATGAAGGAACCGATGAACCTGTAGTTCCTGAAATAAGGCTGACTAG
GAGTAAAGATGGTACAAGTGGCCAAGCATTATTTCAGTTCGAGAAACCTCAGGCACTATCTTCAATTACAGACGGGGAAA
TCACAGGTATGCGTATGATAGATGCTGAAGGTGAAATATTAACCAGAGAAGTTAAGGTTAAGTTTGTTGATGGAGAACCC
ATATTCTTAGAAGCTGTTTATATTTGGAAGAGCACTTCAGACTTTGATAGATTTATGAGATTTGCAAATAGTTATGCAAA
ATCAAATGGATTAGGATATTCTGAGAAGAAGTAG

Upstream 100 bases:

>100_bases
ATGATGAAAAAATCATAGAGTTATTAAATAATATTTTATAAAATATTTGCAAACGAAAGTAAAAAATATTTCTTAAAATA
AAAATTATTAATGAAAACTT

Downstream 100 bases:

>100_bases
AAAACTATCTAATTTGAGTAGCACATTATATTTTAAGTTAGCAGTTATTATAATCACATCTATAATAATTTGGCTTCTTA
GAGATTTCCTACTCCTAATA

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein [H]

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTANKTAKIQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITDGEITGMRMIDAEGEILTREVKVKFVDGEP
IFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEKK

Sequences:

>Translated_117_residues
MTANKTAKIQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITDGEITGMRMIDAEGEILTREVKVKFVDGEP
IFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEKK
>Mature_116_residues
TANKTAKIQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITDGEITGMRMIDAEGEILTREVKVKFVDGEPI
FLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005610
- ProDom:   PD012692 [H]

Pfam domain/function: PF03912 Psb28 [H]

EC number: NA

Molecular weight: Translated: 13202; Mature: 13071

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANKTAKIQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITDGEITGMRMI
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCHHHCCCCCCCCCEEEE
DAEGEILTREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEKK
CCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TANKTAKIQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITDGEITGMRMI
CCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCCHHHCCCCCCCCCEEEE
DAEGEILTREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEKK
CCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA