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The map label for this gene is tqsA [H]

Identifier: 78779257

GI number: 78779257

Start: 806551

End: 807594

Strand: Reverse

Name: tqsA [H]

Synonym: PMT9312_0873

Alternate gene names: 78779257

Gene position: 807594-806551 (Counterclockwise)

Preceding gene: 78779258

Following gene: 78779249

Centisome position: 47.25

GC content: 27.78

Gene sequence:

>1044_bases
TTGAGTAGCACATTATATTTTAAGTTAGCAGTTATTATAATCACATCTATAATAATTTGGCTTCTTAGAGATTTCCTACT
CCTAATAATTTGCTCTTTAGTAATTTCAAATATTGTATGTAATTTATGTAATCAAATACAAAAAGGGTTGAAAATTCCCA
GACCCTTATCTTTATTTTTTGTACTAACAGTTATATCGGTAATAGTCTTTACAATTTTTATTCTTGTTTTACCTCCATTT
GTAAAAGAATTCAATGAAATATTAGTTGATATTCCAAATGGTTTATCTAAAATAAATATTTTACTTAATACAAATCTGAA
TAAATTGAATAGCCTATTTTATGGCGAAGAATCAGAAAATGTTATAGAAATATTTAATCTTATTAATAATGTAGTAGCCA
TTCCAGATGCTGCAACTATCGCTAAAGCTATCCAAGAAAGTTTTAAGAACTTAATTAATTTGGCGGGGAATCTGGGCTCA
GGTCTTTTAAAACTGATCTTCGTATTAGTAGTCAGTTTGATGATTTCTATTGAACCAAAACAATATAAGGAAAATATACT
TCTACTTATACCAAAAAATTATCGTAATAAATTTAGAAATATTCTGGATAAATGCAATATTGCATTAGCAAACTGGACCT
TTTCTATGGTCGTAAGCTCATTATCAGTAGGTTTATTATCATTAATAGTTTTGTCTATATTAGATGTCAAATATGTTGTC
TCAAATGCTTTAATAGCAATGGTTCTTAATATCATTCCGAATATAGGTCCAGTTATTAGTGGTATATTTCCAATCTCAAT
TGCACTACTAGATAATTTCTGGAAACCACTAGCCGTTTTAGGAGCCTATGTAATCATTCAAAATATTGAAAGCTATATAA
TAATGCCATCCATAATGAAGAAAAAAGCAAACCTACTTCCTGGGTTAACCTTAATATCACAATTTGGATTTACCTTCATT
TTTGGTCCATTAGGGTTAATATTATCTCTACCTCTTGCTGTTGTAATCCAAGTTTTAATTAAAGAATCAATTAATGATAT
TTAA

Upstream 100 bases:

>100_bases
AAGAGCACTTCAGACTTTGATAGATTTATGAGATTTGCAAATAGTTATGCAAAATCAAATGGATTAGGATATTCTGAGAA
GAAGTAGAAAACTATCTAAT

Downstream 100 bases:

>100_bases
AAATTACTTATTTAATTTTTTATATAAATATGGATAGGAGAAAAGTATAAAGAAAGCCAAAGGATGTTTAGCCAAAGCAA
AGTACAGGGAATTAAAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Transport of quorum-sensing signal protein [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSSTLYFKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFFVLTVISVIVFTIFILVLPPF
VKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESENVIEIFNLINNVVAIPDAATIAKAIQESFKNLINLAGNLGS
GLLKLIFVLVVSLMISIEPKQYKENILLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVV
SNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLLPGLTLISQFGFTFI
FGPLGLILSLPLAVVIQVLIKESINDI

Sequences:

>Translated_347_residues
MSSTLYFKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFFVLTVISVIVFTIFILVLPPF
VKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESENVIEIFNLINNVVAIPDAATIAKAIQESFKNLINLAGNLGS
GLLKLIFVLVVSLMISIEPKQYKENILLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVV
SNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLLPGLTLISQFGFTFI
FGPLGLILSLPLAVVIQVLIKESINDI
>Mature_346_residues
SSTLYFKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFFVLTVISVIVFTIFILVLPPFV
KEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESENVIEIFNLINNVVAIPDAATIAKAIQESFKNLINLAGNLGSG
LLKLIFVLVVSLMISIEPKQYKENILLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVVS
NALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLLPGLTLISQFGFTFIF
GPLGLILSLPLAVVIQVLIKESINDI

Specific function: Controls the transport of the quorum-sensing signal AI-2 either by enhancing its secretion or inhibiting its uptake and consequently represses biofilm formation and motility and affects the global gene expression in biofilms [H]

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787885, Length=125, Percent_Identity=32.8, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 38422; Mature: 38291

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTLYFKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VLTVISVIVFTIFILVLPPFVKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESEN
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHCCCCCCH
VIEIFNLINNVVAIPDAATIAKAIQESFKNLINLAGNLGSGLLKLIFVLVVSLMISIEPK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH
QYKENILLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVV
HHHCCEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKANLLPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESINDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSTLYFKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VLTVISVIVFTIFILVLPPFVKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESEN
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHCCCCCCH
VIEIFNLINNVVAIPDAATIAKAIQESFKNLINLAGNLGSGLLKLIFVLVVSLMISIEPK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH
QYKENILLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVV
HHHCCEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKANLLPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESINDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]