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The map label for this gene is secD

Identifier: 78779254

GI number: 78779254

Start: 803940

End: 805409

Strand: Direct

Name: secD

Synonym: PMT9312_0870

Alternate gene names: 78779254

Gene position: 803940-805409 (Clockwise)

Preceding gene: 78779253

Following gene: 78779255

Centisome position: 47.04

GC content: 30.34

Gene sequence:

>1470_bases
ATGAAAAGAAGGCAAGGTTGGCTTTTTTTTATTTTATTTCTACTTACTTTATCTGTTTATCTATTAATAAATTATCCCTT
ACAGTTGGGATTGGATTTACAAGGGGGTTCTCAACTTACACTACAAATTATTAAAGAGGAAGGTAAGGTAACAAGGGATG
AACTTGAAGCAGTTAATTCGGTTATAGATAAGCGCGTTAACAATTTAGGAGTTTCTGAGTCTAATTTGCAAACCCTCGGT
GGAGATCAATTGATTTTAGAATTACCAGGTGAACAAAATCCATTAGTTGCTTCAAGGGTATTAGGTAAGACTGCTTTATT
AGAATTTAGAACCCAAAAAGAAGGAACATCTACAGATTTAAAATCACTGCAACTACAGAGATTTAGTATTAAAGAATTAA
TTGAACAATATTCCTTTGCAGAAAAAAATCAAAATGATGATAATTTCTTAAAAGTTATTCAAGATAATCTTAAAGAAATA
GAGCAAGAATTGAATTACTCATCTACTAATAATGATTTATATGGGAAGTTAATTGAAATCAAAAAATATGTTGATAAAGA
AATTACAAATTTATTTATTAAAACAGATTTATCTGGTAAGGATCTTATTAACGCAGGAAGGAGACAAGAACAAACAAATA
ATAATTGGGAAGTTTTATTGACTTTTAGTAATTCAGGAGGTGAAAAGTTTGCAGAAATCACAAAGTCAATCGCTGGCACT
AATCAACTATTGGCTATCATTTTAGATGGTGAATCAATAAGTGAAGCCAGTGTTGGTAATCAGTTCGCTAGTACTGGGAT
TACAGGTGGATCGGCAACAATAAGCGGTAATTTTAGCGCTGAAAATGCTAGAGAATTAGAAGTTCAACTTAAAGGAGGCT
CATTGCCATTGCCAATTGAAATAGTAGAAACTAACACTATAGGGGCTCTATTGGGATCCAAAAATATTTTAAAAAGTCTT
TATGCAGCTATTAGTGGATTAATTTTTGTTGGTATATTTATGATTTTTAATTATAGAATTCTAGGTTTCGTTTCAGTTCT
ATCTCTAGTACTTTATGGTTTCTTTAACTTAGCCCTATATTCTTTAATTCCTGTAACTTTGACTTTACCTGGAATATCTG
GGCTTATACTTAGCATTGGTATGGCTGTTGATGCAAATATTTTAATATTTGAGAGAATTAGAGAAGAATTATATGATGGC
AATACTCTTACAAGATCTATTGATAGCGGTTTTCAGAGAGCTAATTCATCCATAGTTGATGGTCATATTACAACTCTTCT
AAGTTGTTTTGTATTGTTTTTATTAGGAACAAATTTTGTTAAAGGTTTTGCGGCAACATTAGGTATTGGAGTTCTAATAA
GCTTGTTTACCTCATTAAATTGTTCTAAAACTATTTTGCGATTTTTTACAACTTATCAATCTTTAAGACAAAAAAATCTC
TATCTACCCAAGAATAATTTTTCAAATTAA

Upstream 100 bases:

>100_bases
TCCAACTCCTTATAATGGAAATCTTGAGAATTTGACAATAATCCAACCACATCAAATAGTTGAAAAAGTTGAACAGTTAA
TTAGTGGGAGTATATAGACA

Downstream 100 bases:

>100_bases
ATTTTTTGTTTCTAATTTTCCAATGAATTACAATCTTGAACTAATAAAAAATAAAAGAAAGATAATTAGTTTTTCAACTT
TTCTTATTTTGTTCAGTCTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKRRQGWLFFILFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKSLQLQRFSIKELIEQYSFAEKNQNDDNFLKVIQDNLKEI
EQELNYSSTNNDLYGKLIEIKKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNFSN

Sequences:

>Translated_489_residues
MKRRQGWLFFILFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKSLQLQRFSIKELIEQYSFAEKNQNDDNFLKVIQDNLKEI
EQELNYSSTNNDLYGKLIEIKKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNFSN
>Mature_489_residues
MKRRQGWLFFILFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKSLQLQRFSIKELIEQYSFAEKNQNDDNFLKVIQDNLKEI
EQELNYSSTNNDLYGKLIEIKKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNFSN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=482, Percent_Identity=29.6680497925311, Blast_Score=189, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 54016; Mature: 54016

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRQGWLFFILFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCCEEHHEEHHCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
KSLQLQRFSIKELIEQYSFAEKNQNDDNFLKVIQDNLKEIEQELNYSSTNNDLYGKLIEI
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHHHHHHHEEEEECCCCHHHHHCCCHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHHCCHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALY
EEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNFSN
CCCCCCCCC
>Mature Secondary Structure
MKRRQGWLFFILFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCCEEHHEEHHCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
KSLQLQRFSIKELIEQYSFAEKNQNDDNFLKVIQDNLKEIEQELNYSSTNNDLYGKLIEI
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHHHHHHHEEEEECCCCHHHHHCCCHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHHCCHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALY
EEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNFSN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]