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The map label for this gene is secF

Identifier: 78779255

GI number: 78779255

Start: 805432

End: 806346

Strand: Direct

Name: secF

Synonym: PMT9312_0871

Alternate gene names: 78779255

Gene position: 805432-806346 (Clockwise)

Preceding gene: 78779254

Following gene: 78779256

Centisome position: 47.12

GC content: 26.34

Gene sequence:

>915_bases
ATGAATTACAATCTTGAACTAATAAAAAATAAAAGAAAGATAATTAGTTTTTCAACTTTTCTTATTTTGTTCAGTCTTTT
AGGAATTTTATTTTCAACTTTTAATACTTCTTATAGGAAACCTATAAATTTAGGGATGGATTTTGTTGGGGGAAATGAAC
TAAGAATAGAAAGAGTTTGTGAAGAAGAATGTTCTAATCTTTCCCCTGATTTTGTTTTAGATAATTTAAGAGTGATCTCT
AGTAATAAAAACTTTATAAATAATATTAAATTACAATTCCAAAATAATAATAAATTAATTTCAATAAGAACACCTTATTT
GAGTATCGAAGAATCAAATAATCTAATTACTAATCTTGATAATATTATTGGGCCTCTAAATTATGAGAGTAAGGATTCAA
GATTAATAGGTCCAAAGCTTGGGAAAAGACTACTTACCAATTGTGTTACTTCATTGTTAGTTTCTTTATTTGCAATATCT
TTATATATAACTATTAGGTTTGATAAAAAATATGCATTATTTGCATTATTAGCTTTATTTCATGATTTATTAATTGTTTT
CGGTATATTCTCTTGGTTGGGAATTATATTATCTGTCGAGGTAAATAGTTTATTTGCGGTGTCCTTGTTAACTATTGCTG
GTTATTCTGTAAATGATACTGTTGTTATTTTTGATAGAATTCGTGAGAATTTAAAATCAAAGGAAGAAGGCTATAACGAA
ACTATTCAATTATCAGTAAACGAATCATTTAGGAGAACAACTTTTACCAGTATTACAACCCTTATCCCTTTATTAAGCAT
AATTTTGTTTGGATCTTACTCGCTGTTTTGGTTTTCTTTGGCCTTATCATTAGGAATTATTGTTGGAAGTTATTCAAGTA
TTTTATTGGCTCCATCTTTGTTGCTTAAAGATTAA

Upstream 100 bases:

>100_bases
ATTTTGCGATTTTTTACAACTTATCAATCTTTAAGACAAAAAAATCTCTATCTACCCAAGAATAATTTTTCAAATTAAAT
TTTTTGTTTCTAATTTTCCA

Downstream 100 bases:

>100_bases
GCTTTTCCTTATAACTTTATGAAATTGAATTACTATTTAATAATTTTACTTTCTTTAGTTTTAATAGATCTTTCTACTGA
GCTAAGAATATTATTTGATC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNYNLELIKNKRKIISFSTFLILFSLLGILFSTFNTSYRKPINLGMDFVGGNELRIERVCEEECSNLSPDFVLDNLRVIS
SNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLDNIIGPLNYESKDSRLIGPKLGKRLLTNCVTSLLVSLFAIS
LYITIRFDKKYALFALLALFHDLLIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKSKEEGYNE
TIQLSVNESFRRTTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSLLLKD

Sequences:

>Translated_304_residues
MNYNLELIKNKRKIISFSTFLILFSLLGILFSTFNTSYRKPINLGMDFVGGNELRIERVCEEECSNLSPDFVLDNLRVIS
SNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLDNIIGPLNYESKDSRLIGPKLGKRLLTNCVTSLLVSLFAIS
LYITIRFDKKYALFALLALFHDLLIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKSKEEGYNE
TIQLSVNESFRRTTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSLLLKD
>Mature_304_residues
MNYNLELIKNKRKIISFSTFLILFSLLGILFSTFNTSYRKPINLGMDFVGGNELRIERVCEEECSNLSPDFVLDNLRVIS
SNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLDNIIGPLNYESKDSRLIGPKLGKRLLTNCVTSLLVSLFAIS
LYITIRFDKKYALFALLALFHDLLIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKSKEEGYNE
TIQLSVNESFRRTTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSLLLKD

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=311, Percent_Identity=28.6173633440514, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786609, Length=221, Percent_Identity=29.8642533936652, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34406; Mature: 34406

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYNLELIKNKRKIISFSTFLILFSLLGILFSTFNTSYRKPINLGMDFVGGNELRIERVC
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEECCCCHHHHHHHH
EEECSNLSPDFVLDNLRVISSNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLD
HHHHCCCCCCHHHHCEEEEECCCCCEEEEEEEEECCCEEEEEECCEEEEECCCCHHHHHH
NIIGPLNYESKDSRLIGPKLGKRLLTNCVTSLLVSLFAISLYITIRFDKKYALFALLALF
HHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHH
HDLLIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKSKEEGYNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCC
TIQLSVNESFRRTTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSL
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LLKD
HHCC
>Mature Secondary Structure
MNYNLELIKNKRKIISFSTFLILFSLLGILFSTFNTSYRKPINLGMDFVGGNELRIERVC
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEECCCCHHHHHHHH
EEECSNLSPDFVLDNLRVISSNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLD
HHHHCCCCCCHHHHCEEEEECCCCCEEEEEEEEECCCEEEEEECCEEEEECCCCHHHHHH
NIIGPLNYESKDSRLIGPKLGKRLLTNCVTSLLVSLFAISLYITIRFDKKYALFALLALF
HHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHH
HDLLIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKSKEEGYNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCC
TIQLSVNESFRRTTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSL
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LLKD
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]