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The map label for this gene is yciR [C]

Identifier: 78484742

GI number: 78484742

Start: 447516

End: 449183

Strand: Reverse

Name: yciR [C]

Synonym: Tcr_0397

Alternate gene names: 78484742

Gene position: 449183-447516 (Counterclockwise)

Preceding gene: 78484744

Following gene: 78484741

Centisome position: 18.5

GC content: 43.71

Gene sequence:

>1668_bases
ATGAACGATTTATTTAAGAGCTCTTTTAACGGGCCATCTTGGAACCTAATGACTTCATCCAGCAACTTGACTCAAAAAAC
ATTTTGGCTCAATTTTATAGGCATTTACCTGTTATTGCTGGCCGTACTTGGCTTTCTGATTTCAAGCTGGTACAGCTTAA
AATCCACACAAGAACTTGAACTCATCAAACTGAATCAATCCCAAGTCGTGTCCCGTGCAAAAAGTATTATGCTTGAAGAG
TACGAAAGCATGTTGTCGGATTTATTGACCTTAGCGTCTCTTCCATTGCACTCACATTCCCGAAATACCACGTCGGAACA
CCGCTTTAAACAAGATTTGGCCTCCACCTATTTGGTTCTATCACAGACCCGCGGGCGCTACGATCAAATTCGCTACATTG
ACAAAGAAGGCATGGAAAAAGTTCGGGTGGACTATAACGACGGCACCCCTAGCCTCACACCTCAAAGTCAGCTGCAAAAT
AAAAAAACGCGTTACTATTTTCAAGACATTAATCAACTCTCACCGAAAGAAATCTACATTTCACGTTTTGACCTTAATAT
CGAACAAGGCAAGATCGAGCAACCTTACAAGCCGATTATTCGAATGGGCAAGGCCATTTTTAATGAACGTGGCCAGCGCC
AAGGGATATTATTACTGAACTATCTTGGTAAGGTTTTGCTCTCCAAGCTTAACCGATTGCGCCAATCAGAAGGGTCACAA
CTGATGATTGTCGATCAAATGGGATACTGGCTAAAACACCCCAACCCGGATAAAGAATGGGGCTTCATGTTTCAGGATAA
ACAAAACCAAACCTTCGCGGCCGCGCACCCTAAGCTATGGCAAACCATGCTGACTCAACACTCTGGACAGATCACAACGC
CACAAGGGTTATACTCGTTTGAATCCGTCTTTCCATTAAAGTCCGAATCCATTTCCGAATTGGGGCATTACCAACTTCGG
GACAAACAATTTTCAACCCAAGCCGATCTTAAAAATTACCAATGGCTATTGATTTCCTATACACCAAGAACATACTTTAC
TCAAAAGCTAAAAAACCAACTGCAAAACATGGCCTCCCTTTTGATCGGCATCATCGTCTTAATGGGCGGAATTGCCTTTC
TGTTTGCATCGAACCGACACCAAAAACAATTACTGCAACAAAAGGCTCGCTATTTGGCTTACCATGATTCTTTAACGGGG
CTTTATAACCGCTATGCACTGACGCAAACAGAAGGCCAACATAACCTGTTGGCCAATAAATCAGACAACGACAGCTACTC
TGTGTTCTTTCTTGATCTGGATGGCTTTAAACCAATCAATGACACTTACGGACACCAAGTGGGCGATCAAGTGCTGCAAA
CCATCGCCAGTCGACTTAAAAACACCGTTCGAAAAGAAGACATTGTGGTGCGTGTCGGTGGCGATGAGTTCGCCATCATC
ACCTACCATACCGTCGACCGTGTCGCCATCCAGATTTTCGGTGACCGTCTTATCAAAGCCATCGAAAAACCGATTCAACT
GGATGACAAAACGCTTCACCTAGGTACCAGTATTGGCGTCGCTTCTTACCCGCAGAATGGTGATACCTTAAACCAACTGA
TCGATTTAGCTGACGCTGCAATGTACAAAGCCAAAAAATCCGGCAAAGGCAAACTTTGTTTTGCTTAA

Upstream 100 bases:

>100_bases
CGCACACGGCGTTTGAAAAAGAACCTTACCTGAAATCCTTGATTTATAAAACAATTTTATAAAAAAACTCAAAAAAACCT
GAAAATATCGTTATTATAAA

Downstream 100 bases:

>100_bases
CCGTCACATCAAATAAGTATTTCTCGTCGCGTCATAAAAACATTCATTCCAAAATCATAATGCATCCATGGCAGACCTAT
TTCAATTACCCTATACTGTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MNDLFKSSFNGPSWNLMTSSSNLTQKTFWLNFIGIYLLLLAVLGFLISSWYSLKSTQELELIKLNQSQVVSRAKSIMLEE
YESMLSDLLTLASLPLHSHSRNTTSEHRFKQDLASTYLVLSQTRGRYDQIRYIDKEGMEKVRVDYNDGTPSLTPQSQLQN
KKTRYYFQDINQLSPKEIYISRFDLNIEQGKIEQPYKPIIRMGKAIFNERGQRQGILLLNYLGKVLLSKLNRLRQSEGSQ
LMIVDQMGYWLKHPNPDKEWGFMFQDKQNQTFAAAHPKLWQTMLTQHSGQITTPQGLYSFESVFPLKSESISELGHYQLR
DKQFSTQADLKNYQWLLISYTPRTYFTQKLKNQLQNMASLLIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYHDSLTG
LYNRYALTQTEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIVVRVGGDEFAII
TYHTVDRVAIQIFGDRLIKAIEKPIQLDDKTLHLGTSIGVASYPQNGDTLNQLIDLADAAMYKAKKSGKGKLCFA

Sequences:

>Translated_555_residues
MNDLFKSSFNGPSWNLMTSSSNLTQKTFWLNFIGIYLLLLAVLGFLISSWYSLKSTQELELIKLNQSQVVSRAKSIMLEE
YESMLSDLLTLASLPLHSHSRNTTSEHRFKQDLASTYLVLSQTRGRYDQIRYIDKEGMEKVRVDYNDGTPSLTPQSQLQN
KKTRYYFQDINQLSPKEIYISRFDLNIEQGKIEQPYKPIIRMGKAIFNERGQRQGILLLNYLGKVLLSKLNRLRQSEGSQ
LMIVDQMGYWLKHPNPDKEWGFMFQDKQNQTFAAAHPKLWQTMLTQHSGQITTPQGLYSFESVFPLKSESISELGHYQLR
DKQFSTQADLKNYQWLLISYTPRTYFTQKLKNQLQNMASLLIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYHDSLTG
LYNRYALTQTEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIVVRVGGDEFAII
TYHTVDRVAIQIFGDRLIKAIEKPIQLDDKTLHLGTSIGVASYPQNGDTLNQLIDLADAAMYKAKKSGKGKLCFA
>Mature_555_residues
MNDLFKSSFNGPSWNLMTSSSNLTQKTFWLNFIGIYLLLLAVLGFLISSWYSLKSTQELELIKLNQSQVVSRAKSIMLEE
YESMLSDLLTLASLPLHSHSRNTTSEHRFKQDLASTYLVLSQTRGRYDQIRYIDKEGMEKVRVDYNDGTPSLTPQSQLQN
KKTRYYFQDINQLSPKEIYISRFDLNIEQGKIEQPYKPIIRMGKAIFNERGQRQGILLLNYLGKVLLSKLNRLRQSEGSQ
LMIVDQMGYWLKHPNPDKEWGFMFQDKQNQTFAAAHPKLWQTMLTQHSGQITTPQGLYSFESVFPLKSESISELGHYQLR
DKQFSTQADLKNYQWLLISYTPRTYFTQKLKNQLQNMASLLIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYHDSLTG
LYNRYALTQTEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIVVRVGGDEFAII
TYHTVDRVAIQIFGDRLIKAIEKPIQLDDKTLHLGTSIGVASYPQNGDTLNQLIDLADAAMYKAKKSGKGKLCFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=34.1040462427746, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=226, Percent_Identity=30.5309734513274, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=30.7228915662651, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=34.3023255813954, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=30.1587301587302, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.8435754189944, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=30.4597701149425, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=37.1951219512195, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=34.6153846153846, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=34.1614906832298, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=32.7380952380952, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=124, Percent_Identity=36.2903225806452, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=176, Percent_Identity=30.1136363636364, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63695; Mature: 63695

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLFKSSFNGPSWNLMTSSSNLTQKTFWLNFIGIYLLLLAVLGFLISSWYSLKSTQELE
CCCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LIKLNQSQVVSRAKSIMLEEYESMLSDLLTLASLPLHSHSRNTTSEHRFKQDLASTYLVL
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SQTRGRYDQIRYIDKEGMEKVRVDYNDGTPSLTPQSQLQNKKTRYYFQDINQLSPKEIYI
HHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEE
SRFDLNIEQGKIEQPYKPIIRMGKAIFNERGQRQGILLLNYLGKVLLSKLNRLRQSEGSQ
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
LMIVDQMGYWLKHPNPDKEWGFMFQDKQNQTFAAAHPKLWQTMLTQHSGQITTPQGLYSF
EEEEECCCHHHCCCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHH
ESVFPLKSESISELGHYQLRDKQFSTQADLKNYQWLLISYTPRTYFTQKLKNQLQNMASL
HHCCCCCHHHHHHHHCHHHCCCCCCCHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
LIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYHDSLTGLYNRYALTQTEGQHNLLANK
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
SDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIVVRVGGDEFAII
CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEE
TYHTVDRVAIQIFGDRLIKAIEKPIQLDDKTLHLGTSIGVASYPQNGDTLNQLIDLADAA
EEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
MYKAKKSGKGKLCFA
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MNDLFKSSFNGPSWNLMTSSSNLTQKTFWLNFIGIYLLLLAVLGFLISSWYSLKSTQELE
CCCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LIKLNQSQVVSRAKSIMLEEYESMLSDLLTLASLPLHSHSRNTTSEHRFKQDLASTYLVL
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SQTRGRYDQIRYIDKEGMEKVRVDYNDGTPSLTPQSQLQNKKTRYYFQDINQLSPKEIYI
HHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEE
SRFDLNIEQGKIEQPYKPIIRMGKAIFNERGQRQGILLLNYLGKVLLSKLNRLRQSEGSQ
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
LMIVDQMGYWLKHPNPDKEWGFMFQDKQNQTFAAAHPKLWQTMLTQHSGQITTPQGLYSF
EEEEECCCHHHCCCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHH
ESVFPLKSESISELGHYQLRDKQFSTQADLKNYQWLLISYTPRTYFTQKLKNQLQNMASL
HHCCCCCHHHHHHHHCHHHCCCCCCCHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
LIGIIVLMGGIAFLFASNRHQKQLLQQKARYLAYHDSLTGLYNRYALTQTEGQHNLLANK
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
SDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIVVRVGGDEFAII
CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEE
TYHTVDRVAIQIFGDRLIKAIEKPIQLDDKTLHLGTSIGVASYPQNGDTLNQLIDLADAA
EEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
MYKAKKSGKGKLCFA
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]