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The map label for this gene is rho [H]

Identifier: 78484471

GI number: 78484471

Start: 158553

End: 159812

Strand: Reverse

Name: rho [H]

Synonym: Tcr_0126

Alternate gene names: 78484471

Gene position: 159812-158553 (Counterclockwise)

Preceding gene: 78484472

Following gene: 78484470

Centisome position: 6.58

GC content: 44.6

Gene sequence:

>1260_bases
ATGAATTTAAACGATCTCAAAAAAATGTCAGCCGCCGCTCTTCTAGAAATCGCAGCTGAAAAAGGCCTAGAAAATCTAGC
CCGATTAAAAAAACAAGACATTATCTTCGCCATCTTAAAAGCACACGCGAAAAGTGGAGAAGATATCTATGGCGAAGGCG
TCTTAGAAATCCTACCGGATGGGTTTGGATTTCTTCGATCAGGAGACGGCTCTTACTTAGCAGGACCGGATGATTTATAT
GTCTCTCCGAGTCAAATCAGACGCTTTGGACTCCGTAAAGGGGATACCATCCAAGGTAAAATTCGCCCACCAAAAGACAG
TGAACGTTATTTTGCACTGTTGAAAGTAGAGCGTATCAACTTTGAAGACCCGGACGTTGCTCGTAAGAAAATCGCATTTG
AAAACCTGACCCCACTTCATGCGCAAGAACGCTTGAAAATGGAATCCGGAAATGGCAGCACCGAAGACATCACGACTCGA
ATCATTGACATCGCAGCTCCCTTTGGTAAAGGGCAGCGCGGCTTGATTGTTGCCCCGCCAAAATCCGGTAAAACGGTTAT
TTTGCAGCAAATTGCACAATCGATTGCTGAAAACCATCCAGAAGCGTACTTAATTGTTCTGCTTATTGATGAGCGTCCTG
AAGAAGTGACTGAAATGCAAAGAACCGTTAAAGGGGAAGTGATTTCATCGACTTTTGATGAACCGGCTACACGCCACGTT
CAGGTAGCTGAAATGGTCATCGAGAAAGCAAAGCGTCTGGTAGAACACAAAACAGATGTGGTGATCTTACTGGATTCCAT
TACACGTCTGGCCCGTGCGTATAATACGGTCGTGCCGTCTTCCGGTAAAATCTTGACGGGGGGGGTGGATGCCAATGCGC
TTCACCGTCCTAAACGATTCTTTGGTGCCGCTCGAAACATTGAAGAAGGCGGTTCCTTGACCATTATCGCAACCGCATTG
GTTGATACCGGCTCTAAAATGGACGAAGTGATCTTTGAGGAATTCAAAGGAACGGGTAACATGGAGCTTCACTTATCTCG
TAGTATTGCTGAAAAACGTACTTTCCCTGCGATCAATATTGAGAAGTCAGGTACACGTAAAGAAGAGTTGCTGACCACGC
CTGATGAGCTGCAAAACATTTGGATTTTACGTCGTTTCTTACAAGGCTTAAACAATGAAGTTGAGGCAATTGAAACGTTA
ATTGACCAACTCAAAGTAACCAAAACCAATGATGAACTCTTTACGGCGATGAAACGATAA

Upstream 100 bases:

>100_bases
GCGTCCTTTCCAAAGGACGCCATTAATCTAAATCATCCAACTCATTTCTCGAAACAATCTCCAAACCCAATTCAATTAAC
TCAAAGACAGTTACAAATTT

Downstream 100 bases:

>100_bases
TCGCTTTATAAAGCCTGCCAATCGCTATGAAAGGTGTTTGGCAGGAAAAATTTGCAGTAAATTCATTAATTAATTGATGA
TTTTTCTTGCAATTTAGTTT

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPDGFGFLRSGDGSYLAGPDDLY
VSPSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTR
IIDIAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL
VDTGSKMDEVIFEEFKGTGNMELHLSRSIAEKRTFPAINIEKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETL
IDQLKVTKTNDELFTAMKR

Sequences:

>Translated_419_residues
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPDGFGFLRSGDGSYLAGPDDLY
VSPSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTR
IIDIAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL
VDTGSKMDEVIFEEFKGTGNMELHLSRSIAEKRTFPAINIEKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETL
IDQLKVTKTNDELFTAMKR
>Mature_419_residues
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPDGFGFLRSGDGSYLAGPDDLY
VSPSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTR
IIDIAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL
VDTGSKMDEVIFEEFKGTGNMELHLSRSIAEKRTFPAINIEKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETL
IDQLKVTKTNDELFTAMKR

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=419, Percent_Identity=76.1336515513127, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011112
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 46553; Mature: 46553

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
GFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERIN
CCCCEECCCCCEECCCCCCEECHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEEEEECC
FEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTRIIDIAAPFGKGQRGLIVAPP
CCCCHHHHHHHHHHCCCCCCHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECC
KSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHV
CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRF
HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHCCHHH
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRSIAEKRTFPAINI
HHHHCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCEEEE
EKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETLIDQLKVTKTNDELFTAMKR
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCHHHHHHHCC
>Mature Secondary Structure
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIYGEGVLEILPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
GFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRKGDTIQGKIRPPKDSERYFALLKVERIN
CCCCEECCCCCEECCCCCCEECHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEEEEECC
FEDPDVARKKIAFENLTPLHAQERLKMESGNGSTEDITTRIIDIAAPFGKGQRGLIVAPP
CCCCHHHHHHHHHHCCCCCCHHHHHEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECC
KSGKTVILQQIAQSIAENHPEAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHV
CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRF
HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHCCHHH
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRSIAEKRTFPAINI
HHHHCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCEEEE
EKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETLIDQLKVTKTNDELFTAMKR
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]